Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05034 ATGGCTACGGAATATCCTGAGGCTAACAAGGTTGTCCAGTTTTTCATGATCATTACTGAAAATCGTCAACAAGGAGAGCTTATGTTACCAATAAAGTTTGTGAGGAAACATGGACAAGGTTTACCAAATGTTATATGTCTAAAGACTTCCAATGGAGAAAACTGGAAAATAAATTTGGTGATGAATGATGGCAAAATATGGTTTGGACAAGGTTGGAAGGAATTTGCACAGTATTATTCTCTAGGTTATGGCCATCTTCTCGTTTTTAAATATCAAAGACTTTCCGAATTTCATGTTGACATCTTTGATACTACTAGAGTAGAGATAGAGTACCCTCCTAAAAGAGTTGAAGCTGAAAAAGAATGTAGAACAAGTAAGAAGAGAAAAGCTAACTCTTCCTTTGGATTTGGAAGCACTAGTTGTGCCAAAAATAGCAAAGTGCTTCCAAATTCAAAGGAAGAGTTAGCTTTTCTCTTCTTACTTGTTCTACATTCTTTTTCAGCTTCAACTCTTTTAGGAGGGTACTCTATCTCTACTCTAGTAGTATCAAAGATGTCAACATGA 564 0.3564 MATEYPEANKVVQFFMIITENRQQGELMLPIKFVRKHGQGLPNVICLKTSNGENWKINLVMNDGKIWFGQGWKEFAQYYSLGYGHLLVFKYQRLSEFHVDIFDTTRVEIEYPPKRVEAEKECRTSKKRKANSSFGFGSTSCAKNSKVLPNSKEELAFLFLLVLHSFSASTLLGGYSISTLVVSKMST 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05034 187 CDD B3_DNA 16 103 IPR003340 GO:0003677
Vifa1g05034 187 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Vifa1g05034 187 SUPERFAMILY DNA-binding pseudobarrel domain 10 104 IPR015300 -
Vifa1g05034 187 Gene3D - 7 106 IPR015300 -
Vifa1g05034 187 Pfam B3 DNA binding domain 20 104 IPR003340 GO:0003677
Vifa1g05034 187 PANTHER B3 DOMAIN-CONTAINING 10 130 - -
Vifa1g05034 187 SMART B3_2 14 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05034 Vifa-Chr1 784647789 784648536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05034 16 111 B3 DNA Binding Superfamily AT3G18990 38.542 9.91e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa1g05034 B3 7.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05034 - - psat:127127876 199.904