Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05025 ATGGGTAGTGTGAATTACTACAGTATACTTAAGGTGAACCCTGATGCAAGCTATGAACAATTGAAGAAATCGTATAAGAATTTATCAAGGAAATGGCACCCTGATAAGGTTCATCAGGAGCCTTTGAGGAAAAAAGAGTTTGAGGCAATGTTTAAGAGAATTTGTGAGGCGTTTGAGGTTCTTGGTGATCCTAAGAAGCGTAGGATGTATGATCTGTATGGGAAATATCCAGTGAATTTGGAGAATGGTGATGGGAATAATAATATGGAGGTTGATGATGAAGGTGTTGTTGGAGTTGTTGAGAGTGACTTGATGTGTACGCTTGAGGACCTTTATTGTGGTTGCAGGAAGAAGGTTAATCTTGTGAGGACTGTTCCTGATGAATTTGGGGAATTGAAGTCGGAAGAAGAAATCTTGAAGATAACCATCAATCCTGGTTGGAAAAAGGGCACAAAAATCACTTTTCCTGGGAAAGGAAACCAACTACCTGGCTCTCCTCCACTTGATCTGGTTTTTGTGGTGAATGAGAAACCACATGCTCTATTCCAGAGGGATAGACATGATTTGGTAATGACACAAAAGATATCATTCCTTGAATCTCTTGTCGGTACAACTCTCAACATAACAACCTTGGATCGAAGAAATATTATAGTTGAAGTTACTGATATTGTGACACCAGGCTACGAAATGGTCGTACCGGATGAAGGTATGCCACTTGCAAAGGACTCAAGCAAGAGAGGAAATCTTAGAATCAAGTTTGATGTTGAGTTTCCATCAAATTTGACCTCACAACAGAAACATGATGTAAGAAGGATTTTGAGTGAGGCTGATTATAACTAA 840 0.394 MGSVNYYSILKVNPDASYEQLKKSYKNLSRKWHPDKVHQEPLRKKEFEAMFKRICEAFEVLGDPKKRRMYDLYGKYPVNLENGDGNNNMEVDDEGVVGVVESDLMCTLEDLYCGCRKKVNLVRTVPDEFGELKSEEEILKITINPGWKKGTKITFPGKGNQLPGSPPLDLVFVVNEKPHALFQRDRHDLVMTQKISFLESLVGTTLNITTLDRRNIIVEVTDIVTPGYEMVVPDEGMPLAKDSSKRGNLRIKFDVEFPSNLTSQQKHDVRRILSEADYN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05025 279 FunFam Heat shock protein 40 97 177 - -
Vifa1g05025 279 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vifa1g05025 279 PRINTS DnaJ domain signature 7 25 IPR001623 -
Vifa1g05025 279 PRINTS DnaJ domain signature 25 40 IPR001623 -
Vifa1g05025 279 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vifa1g05025 279 Pfam DnaJ domain 5 71 IPR001623 -
Vifa1g05025 279 SUPERFAMILY HSP40/DnaJ peptide-binding domain 102 179 IPR008971 GO:0006457|GO:0051082
Vifa1g05025 279 Gene3D - 98 177 - -
Vifa1g05025 279 CDD DnaJ 5 63 IPR001623 -
Vifa1g05025 279 FunFam DnaJ subfamily B member 13 179 259 - -
Vifa1g05025 279 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vifa1g05025 279 Gene3D DnaJ domain 1 91 IPR036869 -
Vifa1g05025 279 Gene3D - 179 259 - -
Vifa1g05025 279 SMART dnaj_3 4 66 IPR001623 -
Vifa1g05025 279 SUPERFAMILY HSP40/DnaJ peptide-binding domain 182 267 IPR008971 GO:0006457|GO:0051082
Vifa1g05025 279 SUPERFAMILY Chaperone J-domain 2 84 IPR036869 -
Vifa1g05025 279 Pfam DnaJ C terminal domain 100 258 IPR002939 -
Vifa1g05025 279 CDD DnaJ_C 103 261 - -
Vifa1g05025 279 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 5 273 - -
Vifa1g05025 279 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05025 Vifa-Chr1 783734957 783736792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05025 6 73 C2H2 Transcription Factor Family AT1G74250 34.783 5.69e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05025 K09510 - gmx:100778440 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05025 1 783734957 783736792 Vifa1g05025 1 783734957 783736792 ECH
Vifa1g05025 1 783734957 783736792 Vifa1g05025 1 783734957 783736792 PCT