Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05023 ATGACAAAGAAAATTAGAGGATCGGGTACAAAGAAAGTAATAATCAGTGATGATGCCAAGACATATATGAATGAAATAAAGGTTACATTTAAAGATGAGAAGCATAAGTACCATGAATTTTTGATGATTATGAAAGATTTTCAGATAAGAAGAATTGATATACAAGGTGTGATGACAAGAGTGAAGAAGTTGTTTAAACAACACAAAGAATTATTATTAAAATTTAATAATTTTTTGCCTGATGGATTGGAAATCAAACCTCCAACAAAAGAGACAAAAATACTTGAAGTGAATAAAGAAAAAGCTGAAAAATATTTAGACAAAGTGAAGACTCGATTTCGACGTCAACCTTGTATATACAATTCATTTCTAGACATAATGAGTATGTACAAAAACAACAATATAAGCCTTAAGGAGATGTGCGAAATGGTTTTTTCACTTTTTGAACACCACCCTGATCTTGTCAATGGATTTATTAATTTTCTTCCATGA 492 0.2947 MTKKIRGSGTKKVIISDDAKTYMNEIKVTFKDEKHKYHEFLMIMKDFQIRRIDIQGVMTRVKKLFKQHKELLLKFNNFLPDGLEIKPPTKETKILEVNKEKAEKYLDKVKTRFRRQPCIYNSFLDIMSMYKNNNISLKEMCEMVFSLFEHHPDLVNGFINFLP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05023 163 Pfam Paired amphipathic helix repeat 119 162 IPR003822 GO:0006355
Vifa1g05023 163 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Vifa1g05023 163 Gene3D Paired amphipathic helix 102 163 IPR036600 GO:0006355
Vifa1g05023 163 Gene3D Paired amphipathic helix 18 80 IPR036600 GO:0006355
Vifa1g05023 163 PANTHER SIN3B-RELATED 15 163 IPR039774 GO:0003714
Vifa1g05023 163 FunFam Paired amphipathic helix protein Sin3 18 80 - -
Vifa1g05023 163 ProSiteProfiles PAH domain profile. 95 163 IPR003822 GO:0006355
Vifa1g05023 163 SUPERFAMILY PAH2 domain 97 163 IPR036600 GO:0006355
Vifa1g05023 163 ProSiteProfiles PAH domain profile. 11 82 IPR003822 GO:0006355
Vifa1g05023 163 SUPERFAMILY PAH2 domain 16 81 IPR036600 GO:0006355
Vifa1g05023 163 FunFam Paired amphipathic helix SIN3-like protein 95 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05023 Vifa-Chr1 782766855 782768007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05023 5 85 WRKY Transcription Factor Family AT4G12020 37.037 5.51e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g05023 PAH 3.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05023 - K11644 psat:127121411 249.98