Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05021 ATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATTCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTTATCATCTGATGTTGAAAAGGCGATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGCTACCAGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAATCCAGGGATCTATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGAAAATGGCGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCAAAGGTGAACTTGCATTGGCTCACCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGCATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTCAGCAGGAAGACGACTTCAGGCATGTGCAGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGCAAGGAGTGGATATCAATGCAATCGATAGAATTTTGCTTCAATCTTCAAAGCCATTTCTTCACACTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATAAATGTTGTTAAACTCCTTTTGCAGGTTGGTGTAAGACTTGATATCAAGGTCAAATTAGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAATTCCGTGTTGGTGTCGGACTAGCCGAGCCTTTTCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACTGGCACTATACTCAACATGCTTCTCCATCACCTCTCACCTAATAGTTTTCACATGGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTGAATGTACTTCTGAATAATGGGGTTGATACAGAATTGGCCCTTCAAACTACTGAAGAAGAAACCAATCTATACCCTATTCACATGGCTGCACGCCTCGGACTATGCAACATTCTTCAATGTTTGATTAATGGTAACTGTAACTTGGACTCGCAAACAAAACTTGGTGACACGGCGTTGATGGTTTGCACAAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCGTTTGGTCATTGCACAACTTCAACAGCAACTTCTATTCATTGGACTAAAGAATATCAGAAAGCAGTTTTGGATATAATTAGAGCCAGAAAGGTTGTTAAGTCTAGCAATGCGTCTAGATTTTCATCTTTGTTATTCGTCACTCACGCGAATGACATAGAGGCTTTGAAAAAAGTCGTTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGAGTGGATTTTCAGCTGTCATGATATATGCTTCAGAGGGTAGCGTGGAGGCATTCAAGTTGCTTCTTCACGCTGGAGCTGATGTAACCAATCTTAAAAACAAAGATGGTTTAACAGCTCTAGATATCATAGATTTGAAACAAAATGGTGAAGATGGTCATAAGGTGATGTTTGAATATGCACTTAAAAAGGGATGTTTGAATATTAGTACTTTAGCCGAAGCGAATACTCTTCACCGTGCAGCTTGTTATGGAGATATAAACATGGTTGAAAAACTACTAAAGGAAGGGAATTACGATGTGAATGGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCCAGAGAAAGTAATGGAGAAATGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAGAATGAAAATACTTTAAATAAAAAAAAATTAAAGTAA 2214 0.3993 MPLTPSPTPTHKKVNFLVTSRSVDSAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTLSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRIQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTENGGDDGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRHVQVWQELPVLVIVSMLAYFCFLEQLLQGVDINAIDRILLQSSKPFLHTNVDCNALFAAVVSRQINVVKLLLQVGVRLDIKVKLGAWSWETDTGEEFRVGVGLAEPFPITWCAVEYFESTGTILNMLLHHLSPNSFHMGRTLLHHTIICNNERALNVLLNNGVDTELALQTTEEETNLYPIHMAARLGLCNILQCLINGNCNLDSQTKLGDTALMVCTRYKHEKCLRVLVSSGADLGIVNSFGHCTTSTATSIHWTKEYQKAVLDIIRARKVVKSSNASRFSSLLFVTHANDIEALKKVVENRNINLDEQNESGFSAVMIYASEGSVEAFKLLLHAGADVTNLKNKDGLTALDIIDLKQNGEDGHKVMFEYALKKGCLNISTLAEANTLHRAACYGDINMVEKLLKEGNYDVNGFDENGYTPLMLAARESNGEMCGLLISHGAKCDIKNENTLNKKKLK 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05021 737 SUPERFAMILY Ankyrin repeat 415 729 IPR036770 -
Vifa1g05021 737 ProSiteProfiles Ankyrin repeat region circular profile. 696 728 - -
Vifa1g05021 737 Pfam RING-variant domain 198 245 IPR011016 GO:0008270
Vifa1g05021 737 Gene3D - 301 452 IPR036770 -
Vifa1g05021 737 Gene3D - 542 639 IPR036770 -
Vifa1g05021 737 Pfam Ankyrin repeats (3 copies) 646 727 IPR002110 GO:0005515
Vifa1g05021 737 Pfam Ankyrin repeats (3 copies) 434 516 IPR002110 GO:0005515
Vifa1g05021 737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 253 IPR013083 -
Vifa1g05021 737 PANTHER OS02G0165000 PROTEIN 2 306 - -
Vifa1g05021 737 CDD RING_CH-C4HC3_MARCH 198 246 - -
Vifa1g05021 737 Pfam Ankyrin repeat 592 623 IPR002110 GO:0005515
Vifa1g05021 737 Gene3D - 453 541 IPR036770 -
Vifa1g05021 737 Gene3D - 640 733 IPR036770 -
Vifa1g05021 737 ProSiteProfiles Ankyrin repeat profile. 487 519 IPR002110 GO:0005515
Vifa1g05021 737 SUPERFAMILY RING/U-box 194 249 - -
Vifa1g05021 737 SMART ANK_2a 662 692 IPR002110 GO:0005515
Vifa1g05021 737 SMART ANK_2a 696 725 IPR002110 GO:0005515
Vifa1g05021 737 SMART ANK_2a 329 358 IPR002110 GO:0005515
Vifa1g05021 737 SMART ANK_2a 416 445 IPR002110 GO:0005515
Vifa1g05021 737 SMART ANK_2a 487 516 IPR002110 GO:0005515
Vifa1g05021 737 SMART ANK_2a 591 620 IPR002110 GO:0005515
Vifa1g05021 737 SMART ANK_2a 454 483 IPR002110 GO:0005515
Vifa1g05021 737 ProSiteProfiles Ankyrin repeat profile. 591 623 IPR002110 GO:0005515
Vifa1g05021 737 ProSiteProfiles Ankyrin repeat profile. 696 728 IPR002110 GO:0005515
Vifa1g05021 737 ProSiteProfiles Zinc finger RING-CH-type profile. 190 252 IPR011016 GO:0008270
Vifa1g05021 737 Coils Coil 571 591 - -
Vifa1g05021 737 SMART ringv_2 197 246 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05021 Vifa-Chr1 782675196 782678367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05021 186 252 C3H Transcription Factor Family AT2G37950 42.647 4.17e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05021 - - mtr:11444172 686.411