Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05020 ATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATTCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTTATCATCTGATGTTGAAAAGGCGATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGCTACCAGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAATCCAGGGATCTATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGAAAATGGCGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCAAAGGTGAACTTGCATTGGCTCACCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGCATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTCAGCAGGAAGACGACTTCAGGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGCAAGGAGTGGATATCAATGCAATCGATAGAATTTTGCTTCAATCTTCAAAGCCATTTCTTCACACTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATAAATGTTGTTAAACTCCTTTTGCAGGTTGGTGTAAGACTTGATATCAAGGTCAAATTAGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAATTCCGTGTTGGTGTCGGACTAGCCGAGCCTTTTCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACTGGCACTATACTCAACATGCTTCTCCATCACCTCTCACCTAATAGTTTTCACATGGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTGAATGTACTTCTGAATAATGGGGTTGATACAGAATTGGCCCTTCAAACTACTGAAGAAGAAACCAATCTATACCCTATTCACATGGCTGCACGCCTCGGACTATGCAACATTCTTCAATGTTTGATTAATGGTAACTGTAACTTGGACTCGCAAACAAAACTTGGTGACACGGCGTTGATGGTTTGCACAAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCGTTTGGTCATTGCACAACTTCAACAGCAACTTCTATTCATTGGACTAAAGAATATCAGAAAGCAGTTTTGGATATAATTAGAGCCAGAAAGGTTGTTAAGTCTAGCAATGCGTCTAGATTTTCATCTTTGTTATTCGTCACTCACGCGAATGACATAGAGGCTTTGAAAAAAGTCGTTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGAGTGGATTTTCAGCTGTCATGATATATGCTTCAGAGGGTAGCGTGGAGGCATTCAAGTTGCTTCTTCACGCTGGAGCTGATGTAACCAATCTTAAAAACAAAGATGGTTTAACAGCTCTAGATATCATAGATTTGAAACAAAATGGTGAAGATGGTCATAAGGTGATGTTTGAATATGCACTTAAAAAGGGATGTTTGAATATTAGTACTTTAGCCGAAGCGAATACTCTTCACCGTGCAGCTTGTTATGGAGATATAAACATGGTTGAAAAACTACTAAAGGAAGGGAATTACGATGTGAATGGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCCAGAGAAAGTAATGGAGAAATGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAGAATGAAAATACTTTAAATAAAAAAAAATTAAAGTAA 2205 0.3986 MPLTPSPTPTHKKVNFLVTSRSVDSAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTLSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRIQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTENGGDDGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRVWQELPVLVIVSMLAYFCFLEQLLQGVDINAIDRILLQSSKPFLHTNVDCNALFAAVVSRQINVVKLLLQVGVRLDIKVKLGAWSWETDTGEEFRVGVGLAEPFPITWCAVEYFESTGTILNMLLHHLSPNSFHMGRTLLHHTIICNNERALNVLLNNGVDTELALQTTEEETNLYPIHMAARLGLCNILQCLINGNCNLDSQTKLGDTALMVCTRYKHEKCLRVLVSSGADLGIVNSFGHCTTSTATSIHWTKEYQKAVLDIIRARKVVKSSNASRFSSLLFVTHANDIEALKKVVENRNINLDEQNESGFSAVMIYASEGSVEAFKLLLHAGADVTNLKNKDGLTALDIIDLKQNGEDGHKVMFEYALKKGCLNISTLAEANTLHRAACYGDINMVEKLLKEGNYDVNGFDENGYTPLMLAARESNGEMCGLLISHGAKCDIKNENTLNKKKLK 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05020 734 Gene3D - 450 533 IPR036770 -
Vifa1g05020 734 ProSiteProfiles Ankyrin repeat profile. 484 516 IPR002110 GO:0005515
Vifa1g05020 734 PANTHER OS02G0165000 PROTEIN 2 303 - -
Vifa1g05020 734 Pfam RING-variant domain 198 245 IPR011016 GO:0008270
Vifa1g05020 734 ProSiteProfiles Ankyrin repeat region circular profile. 693 725 - -
Vifa1g05020 734 Pfam Ankyrin repeats (3 copies) 431 513 IPR002110 GO:0005515
Vifa1g05020 734 Pfam Ankyrin repeats (3 copies) 643 724 IPR002110 GO:0005515
Vifa1g05020 734 SUPERFAMILY Ankyrin repeat 412 726 IPR036770 -
Vifa1g05020 734 Coils Coil 568 588 - -
Vifa1g05020 734 Pfam Ankyrin repeat 589 620 IPR002110 GO:0005515
Vifa1g05020 734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 253 IPR013083 -
Vifa1g05020 734 ProSiteProfiles Ankyrin repeat profile. 693 725 IPR002110 GO:0005515
Vifa1g05020 734 CDD RING_CH-C4HC3_MARCH 198 246 - -
Vifa1g05020 734 SUPERFAMILY RING/U-box 194 249 - -
Vifa1g05020 734 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Vifa1g05020 734 Gene3D - 299 449 IPR036770 -
Vifa1g05020 734 SMART ANK_2a 326 355 IPR002110 GO:0005515
Vifa1g05020 734 SMART ANK_2a 413 442 IPR002110 GO:0005515
Vifa1g05020 734 SMART ANK_2a 588 617 IPR002110 GO:0005515
Vifa1g05020 734 SMART ANK_2a 484 513 IPR002110 GO:0005515
Vifa1g05020 734 SMART ANK_2a 451 480 IPR002110 GO:0005515
Vifa1g05020 734 SMART ANK_2a 659 689 IPR002110 GO:0005515
Vifa1g05020 734 SMART ANK_2a 693 722 IPR002110 GO:0005515
Vifa1g05020 734 Gene3D - 637 730 IPR036770 -
Vifa1g05020 734 Gene3D - 534 636 IPR036770 -
Vifa1g05020 734 ProSiteProfiles Zinc finger RING-CH-type profile. 190 252 IPR011016 GO:0008270
Vifa1g05020 734 SMART ringv_2 197 246 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05020 Vifa-Chr1 782675196 782678367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05020 186 252 C3H Transcription Factor Family AT2G37950 42.647 4.19e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05020 - - mtr:11444172 686.411