Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05011 ATGTTCAAGGGCACCAATATTTCTACCAATGAGGTTGTAGCTATCAAGATTTTGAACATTCCGGAAAACCAGAAAATTTATGGAGTTCCACACAGAATTTTAAATCACGTCTCTATCCTCAGAATGTTATCCCATCCCAATATTGTCAGTTTGCTGAAAGTGATGGAAACTGAAGATGATGTGTTTCTTGTTTTTGAGTATTTTGACATTAGTCTTAAAAGATACATGGCTTCCAATTACTTGCTTTTCGACATTAAAGGCCAGGAAAAAATTTTTCTACGTCAATATCTTACTGGATTGGCATACTGTCATTCTCACAAAATTCTACACAGAGATCTCAAACCTAATAATCTTCTCGTTTCATTCACTAATTCTCTACATGTTGATCAAGTCAAGCTATGTGACTTTGATGTGGCAAAAATTATTGAACCTCCTCTTTCACCCTACTCTAAGAGGAAGATGGGGAATCCTTGTTATAAAGCACCTGAACTTTTGATAGGTTCTACCCGTTACTCAACTGCAGTTGATATCTGGTCCATGGGCTGCATATTTGCTGAGATGATTAAGCTCAAACCTCTGTTCGTTGGTAGAGACGAACCTGAGATCTTGACTCAGATATTTTGGTAA 627 0.37 MFKGTNISTNEVVAIKILNIPENQKIYGVPHRILNHVSILRMLSHPNIVSLLKVMETEDDVFLVFEYFDISLKRYMASNYLLFDIKGQEKIFLRQYLTGLAYCHSHKILHRDLKPNNLLVSFTNSLHVDQVKLCDFDVAKIIEPPLSPYSKRKMGNPCYKAPELLIGSTRYSTAVDIWSMGCIFAEMIKLKPLFVGRDEPEILTQIFW 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05011 208 SUPERFAMILY Protein kinase-like (PK-like) 2 208 IPR011009 -
Vifa1g05011 208 Gene3D Phosphorylase Kinase; domain 1 2 68 - -
Vifa1g05011 208 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05011 208 Pfam Protein kinase domain 2 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05011 208 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Vifa1g05011 208 SMART serkin_6 2 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05011 208 PANTHER CELL DIVISION PROTEIN KINASE 2 207 - -
Vifa1g05011 208 Gene3D Transferase(Phosphotransferase) domain 1 84 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05011 Vifa-Chr1 781616962 781617868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05011 1 207 Core Cell Cycle Gene Families AT3G48750 44.231 7.28e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa1g05011 Pkinase 9.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05011 K02206 - psat:127137399 188.348