Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04999 ATGTTTCCCTCAACCTTTCTTCTCATCTTCCTCTTTCTACTCTTTCCCACCTCAACACACACATGCTCTTTTAGTAATGAACCTAACACAACAAAAACACACCATTGTCCACCGTTCTCCTCCACCCCACCTTTCCCGTTCTCATCTTCACCAGGCTGTGGCCACCCTTCTTTTCAACTAAACTGCTCATCTCCCCACTCTTTCCTCACCATCAATAACCTCTCTTTCTCCATCATCTCTTACAAACCCAACTCTTCCTCAATCTTACTCTCCCCTCACAACCCACCAAACAACAACACTTGCCCATCTTCATCATCTTCATCGTCCCCAATCCCTAACAAACCCATCAACCTCTCAAACACCCCATTCACTCTCTCAGATGAACTATGCTCTCGTCTCTCTTTTCTCCAACCATGTCCCCCTCCAACCCTCCCCAATTGCACCCACTGCCCTTGGCAATGCAAAATCATCAAAAACCCAACCGAGATCTTCACTAACTGTAGATCTATGCATCACTCTGTTTCGGATTCCGAACCCAGTTGCCAAAGCGATGTTCTTAGTTACCTCAACGAGATACTCACTTTCGGTATCGAACTTCAATGGGATGAAGCACTAACACAAGACACTTACTTCACAAATTGCACACATTGTCTCAACAAAAACGGCTTCTGCGGTTACAATTCATCAGACCCGAGCAAACACTTCATCTGTTTCCATTCTAAAGAAACCATTTCACCACCATGGATTCATAAAATGAAGCTCAACAAAATTGCTGTTTTCGCGGTTATCATCGCTTTCACTTCCTTGCTCCTTTTTATCACAGTAACAATCTCGATTCTCCGATCCAGAAGCTTAAACAAACAATCAGTATCAGAAGATCCAACCACCGCCTTCCTCCACAACCACCACTCCGCGAATCTCTTCCCACCGGTTTTCACCTACGACGAACTGAACTCCTCCACTAACAACTTCGATCCAAATCGAAAACTCGGCGATGGTGGATTCGGTTCGGTCTACCTCGGCAATCTCCGAGACGGAAAACTCGCCGCCGTGAAACACCTCCACCGTCAAAACCCAAACCACACTTCCGCGTTCTCATCAAAATCGTTCTGCAACGAGATTCTGATTCTCTCTTCAATCAACCATCCAAACCTCGTCAAACTTCACGGTTACTGTAGCGATCCTCGTGGTCTGATTCTCGTTTACGATTACGTTCCAAACGGAACCCTAGCGGAACACATTCACGGCTCCAAGAGTAAACGAAACGGTTACAAGCTGACGTGGCAAACGAGGCTTGATATTGCTATACAAACGGCGTTAGCGATGGAGTATCTTCATTTTGCGGTTAAGCCACCGATAGTTCACAGAGATATAACGTCGTCGAATATCTTCGTTGAGAAGGATATGAGAATCAAAGTCGGTGATTTCGGGTTATCGAGGCTGTTGATTTTGCAAGAAACGAGTCAAACAGCGTCGTCTGGTGGTTACGTTTGGACCGGTCCTCAAGGTACACCGGGGTATTTAGATCCGGATTATCACCGGTCGTTCCGGTTAACGGAAAAGAGTGACGTGTATAGTTTTGGTGTGGTTTTGCTTGAACTGATATCGGGGCTTAAAGCTGTGGATTATTGTAGGGATAAACGTGAGATGGCTCTTGCTGATATGGTTGTTTCTAGGATTCATACGGGTCAGTTGAGGGAGGTACTTGACCCGGTTCTTGATTTGGGGAACGACGGTGAGGCGCTTGACGCGGTGGCGGCTGTGGCGGAGTTGGCGTTCCGGTGTGTTGCGGCGGATAAAGATGATAGACCTGATTCGAGGGAGGTTGTTGCGGAGTTGAAACGGGTTCGGTTACGAAGGTTTGTGAATGATGACGTGGCATCAGATTGA 1890 0.4672 MFPSTFLLIFLFLLFPTSTHTCSFSNEPNTTKTHHCPPFSSTPPFPFSSSPGCGHPSFQLNCSSPHSFLTINNLSFSIISYKPNSSSILLSPHNPPNNNTCPSSSSSSSPIPNKPINLSNTPFTLSDELCSRLSFLQPCPPPTLPNCTHCPWQCKIIKNPTEIFTNCRSMHHSVSDSEPSCQSDVLSYLNEILTFGIELQWDEALTQDTYFTNCTHCLNKNGFCGYNSSDPSKHFICFHSKETISPPWIHKMKLNKIAVFAVIIAFTSLLLFITVTISILRSRSLNKQSVSEDPTTAFLHNHHSANLFPPVFTYDELNSSTNNFDPNRKLGDGGFGSVYLGNLRDGKLAAVKHLHRQNPNHTSAFSSKSFCNEILILSSINHPNLVKLHGYCSDPRGLILVYDYVPNGTLAEHIHGSKSKRNGYKLTWQTRLDIAIQTALAMEYLHFAVKPPIVHRDITSSNIFVEKDMRIKVGDFGLSRLLILQETSQTASSGGYVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDYCRDKREMALADMVVSRIHTGQLREVLDPVLDLGNDGEALDAVAAVAELAFRCVAADKDDRPDSREVVAELKRVRLRRFVNDDVASD 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04999 629 ProSitePatterns Tyrosine protein kinases specific active-site signature. 453 465 IPR008266 GO:0004672|GO:0006468
Vifa1g04999 629 FunFam Putative serine/threonine-protein kinase At1g18390 family 300 404 - -
Vifa1g04999 629 Pfam Protein tyrosine and serine/threonine kinase 327 613 IPR001245 GO:0004672|GO:0006468
Vifa1g04999 629 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 620 IPR044652 GO:0004672
Vifa1g04999 629 CDD STKc_IRAK 330 615 - -
Vifa1g04999 629 SUPERFAMILY Protein kinase-like (PK-like) 304 613 IPR011009 -
Vifa1g04999 629 Gene3D Phosphorylase Kinase; domain 1 299 404 - -
Vifa1g04999 629 Pfam Wall-associated receptor kinase C-terminal 164 240 IPR032872 -
Vifa1g04999 629 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Vifa1g04999 629 Gene3D Transferase(Phosphotransferase) domain 1 405 626 - -
Vifa1g04999 629 ProSiteProfiles Protein kinase domain profile. 324 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04999 Vifa-Chr1 780160416 780162305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04999 7 629 Receptor kinase-like Gene Family AT1G69910 58.529 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vifa1g04999 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04999 - - gmx:100816739 763.066