Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04996 ATGGCCACTAATGAGTTGAAGCTTTTGGGTTGTTGGTTCAGTCCATTTACATGTAGGGTAAAATTTGTCCTTAACATCAAAGGTTTGGAACATGACAATATTGAAGAAACTTTCTTTCCTAGAAGTGATTTGGTTCTTCAGTCCAATCCTGTATACAAGAAAATTCCAGTTTTCAGTCATGGAGATAAAATCATTTGTGAATCTCCAATCATAATTGAGTATATTGATCAAGTTTGGAAAGATAATGGTGCTCCCTCTATCCTTCCTTCAAATGCTTTTGATAGAGCCGTGGCTAGATTTTGGGTTGCCTACATAGATGACAAGCTTTTCAATTCCCTACGAAATGGTTTAATTGCTCAAGATGAAGAATCAAAGAAGAGACATTTTGAGCAAGTAGAACAAGTGTTTGTGACGTTGGAAGATGAGATCAACAAGTGCAATAACGATGCAAATTACTTTTTTGGAGGAGATAAAGTTGGATTAATTGATGTTGGTTTTGGGTGCTTTGTGGGTTGGATTAGGGCAATAGAGAAAATAGAACAAATCAAGTTGCTTGATGAAGCTAAGACTCCTGCTTTGGTGAAATGGGTTGAAGCTTTTGTTGTTCATCCTGCTGTCAAGGGAGTTCTACCAGAAACTAATAAACTTGTGGAGTTTGCAAAGATTTATGTGCAAAGATTGGTTAATGCTACCCTTAAGTAA 702 0.3661 MATNELKLLGCWFSPFTCRVKFVLNIKGLEHDNIEETFFPRSDLVLQSNPVYKKIPVFSHGDKIICESPIIIEYIDQVWKDNGAPSILPSNAFDRAVARFWVAYIDDKLFNSLRNGLIAQDEESKKRHFEQVEQVFVTLEDEINKCNNDANYFFGGDKVGLIDVGFGCFVGWIRAIEKIEQIKLLDEAKTPALVKWVEAFVVHPAVKGVLPETNKLVEFAKIYVQRLVNATLK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04996 233 Coils Coil 129 149 - -
Vifa1g04996 233 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Vifa1g04996 233 SUPERFAMILY Thioredoxin-like 5 110 IPR036249 -
Vifa1g04996 233 SFLD Main.3: Omega- and Tau-like 2 229 IPR045073 -
Vifa1g04996 233 CDD GST_C_Tau 92 223 IPR045074 GO:0004364|GO:0006749
Vifa1g04996 233 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 223 IPR010987 -
Vifa1g04996 233 FunFam Glutathione S-transferase GSTU6 1 87 - -
Vifa1g04996 233 Gene3D - 88 231 - -
Vifa1g04996 233 Pfam Glutathione S-transferase, C-terminal domain 100 202 IPR004046 -
Vifa1g04996 233 SFLD Glutathione Transferase (cytosolic) 2 229 IPR040079 -
Vifa1g04996 233 CDD GST_N_Tau 6 79 - -
Vifa1g04996 233 SUPERFAMILY GST C-terminal domain-like 78 227 IPR036282 -
Vifa1g04996 233 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Vifa1g04996 233 Gene3D Glutaredoxin 1 87 - -
Vifa1g04996 233 FunFam Glutathione S-transferase U9 88 230 - -
Vifa1g04996 233 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 218 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04996 Vifa-Chr1 779552496 779555149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04996 1 221 Glutathione S-transferase Gene Family AT1G10370 50.679 4.24e-75 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04996 K00799 - gmx:100500281 275.018