Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04994 ATGGCCACTAATGAGTTGAAGCTTTTGGGTGGTTGGTACAGTCCATTTGCAGTGAGGGTACAAATTGCTCTTAGCATCAAGGGTTTGGATTATGAGAATAATGTAGAAAACATAAACTCCAAAAGTGACTTGCTTCTTCAGTCCAATCCTGTATACAAGAAAATCCCAGTTCTCATTCATGGAGATAAACCCATTTCTGAATCTGCAAACATAGTTGAATATATTGATGAAGTTTGGAAAGATAATGGTATTCCCTCTATTCTTCCTTCAAATGCTTTTGATAAAGCCATTGCTAGATTTTGGGTTGCCTACATAGATGACAAGTTCTACAACTCCATGCGTAATGGTTTATTCGCTAAAGATGAAGAGTCAAAGAAGGCATATTTCGAGCAACTAGAAGTAGTTCTTGCGACATTAGAAGATGTGATCAACAAATGCAGTAAAGGAAACCATTTTTTTGGAGGAGATAGCATCGGATTTATTGATATTGCTTTGGGATGCTATTTGAGTTGGATGAGGGTGAAAGAGAAAGTAACAGGAAAGATGTTTGATGAAGCCAAGACTCCTGCATTGGTGAAATGGGCTGAGGCATTTGCTGCTCATCCTGCTGTGAAGGGAATTCTACCAGAAACTGATAAACTCTTGGAGTATGCCAAAGCTTTGTTACAAAAGTAA 675 0.3822 MATNELKLLGGWYSPFAVRVQIALSIKGLDYENNVENINSKSDLLLQSNPVYKKIPVLIHGDKPISESANIVEYIDEVWKDNGIPSILPSNAFDKAIARFWVAYIDDKFYNSMRNGLFAKDEESKKAYFEQLEVVLATLEDVINKCSKGNHFFGGDSIGFIDIALGCYLSWMRVKEKVTGKMFDEAKTPALVKWAEAFAAHPAVKGILPETDKLLEYAKALLQK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04994 224 CDD GST_C_Tau 92 221 IPR045074 GO:0004364|GO:0006749
Vifa1g04994 224 Gene3D Glutaredoxin 1 87 - -
Vifa1g04994 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Vifa1g04994 224 Pfam Glutathione S-transferase, C-terminal domain 95 202 IPR004046 -
Vifa1g04994 224 SUPERFAMILY GST C-terminal domain-like 77 223 IPR036282 -
Vifa1g04994 224 SFLD Main (cytGST) 2 222 - -
Vifa1g04994 224 FunFam Glutathione S-transferase GSTU6 1 87 - -
Vifa1g04994 224 CDD GST_N_Tau 6 79 - -
Vifa1g04994 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 216 IPR045073 -
Vifa1g04994 224 FunFam Glutathione S-transferase U9 88 224 - -
Vifa1g04994 224 Gene3D - 88 224 - -
Vifa1g04994 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 221 IPR010987 -
Vifa1g04994 224 SUPERFAMILY Thioredoxin-like 5 110 IPR036249 -
Vifa1g04994 224 SFLD Main.3: Omega- and Tau-like 2 222 IPR045073 -
Vifa1g04994 224 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04994 Vifa-Chr1 779084481 779088657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04994 1 224 Glutathione S-transferase Gene Family AT1G10370 56.444 2.94e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04994 K00799 - gmx:100500281 287.345