Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04993 ATGGTGAAGCTTCCATTCTTCGATTCGACTCAATCTTCTTCATCTTCTGCGCGATCTTTGTATCATCCGAATATCAAGAATTTCAACCGCCGGTCACTGCAATTTGAGTGTTCATTCAGTATATTAAATCCATCCTCTTTGTCGAGAAAGGGTCTTGATGTTCATACTGTCCATCTCCATAGGCTACTGATGCGCTTTCAACATTTAGAGTCTTTATCCTTATGTGGTTGTACGGAGCTCAATGATTCAGGATTAACCCGTCTGCTAAGCTATGGTTCGAATTTACAGAAACTTAATCTAGATTGTTGTTTGAAAGTTACTGATTACGGGCTATCCCTGGTTGCTTCTGGTTGTCCCTCATTGACGTCAATTAGTCTCTATCGGTGTATCAACATTTCTGATGACGGATTAGAGACTTTAGCCACTGCTTGTTTATCTTTGAAATGCATAAACCTCTCGTACTGCTCACAAATATCCGACAAAGGGTTGAAAGCTCTTACTCAGAGGTGTCGTCAGCTTCAGGCAGTTAACATATCACACTGTGAGAGTATAAGAGGTGTTGGCTTCAAAGGGTGTTCAAAATCTCTCACACATGTAGAGGCTTGGTCTTGTAAGCTCAACCCAGAAGGGGTGACGGGAATAATTAGTGGCGGTGGTATAGAGTATCTAGACGTATCTTGTTTAAGTTGGTATCCCTTAGGAGATACCTTGCTTGGAATAAGATTGTCCTCAAACCTCAAAGTCCTTAACTTTCGAATGTGCAGATCTGTTTCCGATACTTCTATTGTTGCAATAGCCATGGGATGTACACTACTTGAAGAATGGAACTTAGCATTATGTCATGAGGTGAGGATATCTGGATGGCAAGCAGTGGGGTTATATTGTCAGAATTTGAAGAGACTGCATGTTAATCGATGCCGTAATCTCAATGATAATGGCCTGCAGGCATTACGAGACGGTTGCAGAAGTCTCTCGGTTTTGTACTTGAATGGTTGTGTTCACGTGACTCCTTTTTCATTAGAGTTATTCAAGTCTCACAGAGCAAATGTTTGTATAAAGAATGAAGAGAAAGCTTTACCATTACCTGATCAAGTAGACAATGCTATAAACTACATAAAGAGCTTAGAGACAAATTTGAAATTGGCAAAGGAGAAGAAAGAAAGTTTAATGAGAAGCAAGAGATTGCGTAGTGGCTGTTCGAGTTCTACTGGAGCAAAAGGAAGCATAAAATCACCAAAAATAGAGATTCATGAAAATGGTTCTTCTCTACAAGTTATTGTAACTTGTGGGGTTGATGAACAGTTTATTTTCTGTGAAATTATGAGAATATTGCATGAAGATCTCGTGGAGGTCATCTCTGCAAATTCTTCACTGGTTGGAGATTCAGTTATTCATGTTGTGCATGCTGAGAATCCGCAATTATTGTTTCAATATGGAGCGACCAAAGTGGGTGAGAGATTGAAAAGGTTTGTGAATGGATCTGTGAGAGAGGTGCAAATAGAGCCTCAATTATGGGATTCTGAGATTGAAACTGAGACTTGGGATCTAAGTTCTATAGTAAACAAGTGTTTACCAAATTCTTTATGA 1587 0.3957 MVKLPFFDSTQSSSSSARSLYHPNIKNFNRRSLQFECSFSILNPSSLSRKGLDVHTVHLHRLLMRFQHLESLSLCGCTELNDSGLTRLLSYGSNLQKLNLDCCLKVTDYGLSLVASGCPSLTSISLYRCINISDDGLETLATACLSLKCINLSYCSQISDKGLKALTQRCRQLQAVNISHCESIRGVGFKGCSKSLTHVEAWSCKLNPEGVTGIISGGGIEYLDVSCLSWYPLGDTLLGIRLSSNLKVLNFRMCRSVSDTSIVAIAMGCTLLEEWNLALCHEVRISGWQAVGLYCQNLKRLHVNRCRNLNDNGLQALRDGCRSLSVLYLNGCVHVTPFSLELFKSHRANVCIKNEEKALPLPDQVDNAINYIKSLETNLKLAKEKKESLMRSKRLRSGCSSSTGAKGSIKSPKIEIHENGSSLQVIVTCGVDEQFIFCEIMRILHEDLVEVISANSSLVGDSVIHVVHAENPQLLFQYGATKVGERLKRFVNGSVREVQIEPQLWDSEIETETWDLSSIVNKCLPNSL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04993 528 PANTHER UNCHARACTERIZED 44 226 - -
Vifa1g04993 528 Gene3D Ribonuclease Inhibitor 2 156 IPR032675 -
Vifa1g04993 528 SUPERFAMILY RNI-like 41 343 - -
Vifa1g04993 528 SMART LRR_CC_2 321 346 IPR006553 -
Vifa1g04993 528 SMART LRR_CC_2 295 320 IPR006553 -
Vifa1g04993 528 SMART LRR_CC_2 243 268 IPR006553 -
Vifa1g04993 528 SMART LRR_CC_2 92 117 IPR006553 -
Vifa1g04993 528 SMART LRR_CC_2 66 91 IPR006553 -
Vifa1g04993 528 SMART LRR_CC_2 144 169 IPR006553 -
Vifa1g04993 528 SMART LRR_CC_2 118 143 IPR006553 -
Vifa1g04993 528 SMART LRR_CC_2 170 195 IPR006553 -
Vifa1g04993 528 Pfam Leucine Rich repeat 144 166 IPR001611 GO:0005515
Vifa1g04993 528 Pfam Leucine Rich repeat 294 317 IPR001611 GO:0005515
Vifa1g04993 528 Coils Coil 365 392 - -
Vifa1g04993 528 Gene3D Ribonuclease Inhibitor 158 378 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04993 Vifa-Chr1 778962227 778964494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04993 357 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.986 1.39e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04993 K10268 - gmx:102667402 524.242