Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04977 ATGGCCCTAAATAAGACGGGAAATGAGCATGGCTTGTTTCCGAAATACAACCAACAAGAATCGCATAGTAATGTTACAAATGTACATAATAGTAATAATAAAAATATCCCTAAAGAGGTTGGAAGAGTTTTTGCTTCGCCTGATGTATCGCAAAATCGTGAGAGTAGGTTTGGATTGAATAGGGAGAATGACCATGTGAGATACGAAGATCTTACCAATATTTTAGGGTTGAAGAGAATGGATTCTGAGAGTTTTTATGATATAGGTGAGTGTATCCCTAAACAACAGCCACCGGCACAAGAGATGGAAAATGGCGTTTCTGCAAACATTTTAAGCAAAGGTCAAAAGGGAGACAACAACAATGGTGGCCTTGGTGCGTTGAGGAAGACATATAGTGAATCAATTAGTGAGCAAATCGGTACTAGGCCAGCTGTGTTATCGCCTGTTTACTTACATAAAAGATCTAACTCAAATGGGTTTTCCGGTTCTGGAATTTTAGAAGATTCTTCGTCTGGTGGGAAAATGAAGTTTCTTTGCAGCTTCGGCGGAAAAATATTACCGAGGCCTGGTGATGGTAAACTCAGATACGTTGGTGGAGAAACTCACATCATATCTATCCAAAAGGATGTTTCGTGGGAAGAGCTTATGAACAAGACTTTACGTATTTGCAGTCAACCTCACACAATCAAATACCAACTTCCAGGGGAAGATCTTGATGCTCTAATATCGGTTTCTTCCGATGAGGATCTTCAAAACATGATAGAGGAATATCATGGACTTGAAAGTCACGAAGGTTCTCAGAAACTTCGAATTTTTTTAGTTCCTTTCGGTGAATCTGAAGAGACATCATCAACCGATGCAAACACCGTTCTGCAGAATGACCCCGATTACCAATACGTTGTTGCTTTAAACGGCATAATAGACCATAGTCCTAGGAAAAACATCGGTGGACAAAGTTTGACAAACGAAGCAAATCATTCAGCGACTAGTTTCAGTTTTGCCCCAACAATCGCCTCTTCTCCTAAGGAGATCAGGGATGGTAAGAATGGTATGAGTGGTTTAAATCCAGATAGAATTTTGAATGATTCCGTAAATCTTCAAAGTCCATTGCGAATTTCTCCTACTCCAGTTCAAGTTGCAGGTTCTACAGGTTATATACAATTGCTTGGCGGCAACTCATGCCAGGGAAGTATTGACAGCAATGCATCATTTGTTACCGCTCAGATGCATTCTGGAAACTCGAGCATTAATGCTGCTGATTGCCGATACCCTCAACAAGCTTCTGTTCCTCGTCAACATGGTGACATTGGTCCACCCAAAAATCTCAACGGACAGTATTTTGATAACTGCATTGCAAATAATGGTTACAGCGATGATGTTTTTGGCGGAACCTTGCATAAGGATAGAATATTCTCTAGAAATCCGATCGCTCAACAGACCGAAACTTATGGAACTAATAACATTCTGTCTCATGGGATGACTCATGCTTTTTCTGATTCACAGTTGCATCCGAGTGGATTAAAGTCTATTTACTGCTCACAAGAAGGAATTACCCCGTCTTTCTCCTTGAACCTTGAAAAGGCCGAATTATCTTCGACGGTGGGTGTCTCGCAAGTGAACCTTATCAAGGGTCAACACGATCCCTTCCTCCATCATCCTCAATTACAAAGTAAGATACCAAATGTGGAGTCAGCTGAGATGCATAGACGACAAGGTGTGGCATCATCATCTCCCTACTCGGAATCAGTTGGAACGAATGATCGCATTAATAAGGACAGCATTTTAACTGAAAAAAAGTACCTTGTTGCTCAAACCGACTTAAGTGGATCCAACTTTGTAGAAAACGACATGCAGGAAAATCCTTTGAAGTTAGAAAGGATGATGATAAATGAAGACAAGTATCCTATTTCTAAGAAGGATAACAACGTTTACGAGGGAAATTCAACTGTCAACTACATGAGTGAATTGCATCTTTTGGATACATTCTCGACTAATAACATAAGTTCTCAGATTGGTATGCAATATAATTGGGATCAACCTCGTGAGGACACACCTCCTTCATCATCAGGCATGACGGGGCTCTCGCTAAATAACCTTGTCGACAAGACCCCGTCTGATCTTCTTGACATTGGCCAAAAGACAAGTTATGGCAGAAACATCGATTTTCCAGCCAGAAATATCAATTTAAATTCTCCAATCTCAGAACATGCAGAAAACTCTCGTGACAAAAGTTCTGTCAGAGATGATATGTTCAACTTCTCCTTCGATCCACATTCTCTTAAATCTGCACAAGTTCAGCCTTCTCAGAATCAGATCACTACAGGTTTTCATGATAATCCAACAATAAAGTCTGAAAGTTTGAATCCTGCTGTACTTCATGATGATGTCCGTCTAATTATGGTCTTGCCAGTTGATGGCCTGGATAATTCAAGAAAGAATATTTCTTTTAAAAAGGAACCTTCTCTTCTCAATGACTTCATTACAAACACCGATCAAATGGTTGATCAGTTTAAACACGAACGTTCTGCCTTTGGATTGTCAAAAGTTGAAAGTGAAATTTTAGAACAACTGAAAAATTCAGAAAGGTCTAATAATGCTAAACTAGTGGAGTCATTTGCTGTAGTAGAAGATGCGACTGGTGTTGTTCCTTCAAATCGCAAGTCTTCACCTGTACACACCCCACGTAATTTTGATAAAGTTGGAAGTGATGTATCTCCATCTCAAACGGAAGTAGAGAGCACCATCCCAGAGTCTGATCCTGAGGATTATAAAGACGATCAAACCGACGTGAATGACTTCCTTTCTGATGCAACGATAGCAGAAATGGAGGCCAGCATATACGGTTTGCAGATAATTAGGAACACTGATCTTGAAGAACTTATGGAGTTAGGATCTGGTACCTATGGAACTGTTTATCATGGAAAATGGCGAGGGACAGATGTTGCAATCAAGAGAATTAAAAAGAGCTGCTTTGGAGGGAGATCTTCTGAGCAAGAACAGTTGGCTAAAGATTTCTGGAGAGAGGCACAGATCCTGTCAAATCTTCATCATCCCAATGTACTCGCATTTTATGGAATCGTACCGGACGGAGCTTGTGGGACCTTAGCAACTGTAACAGAATATATGGTGAATGGTTCCCTTAGACATGTTCTTGTCAAGAACAACAGATTACTAGATCGTCGTAAAAAGCTTATAATTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCATTCAAAGAATATTGTCCATTTTGATTTGAAGTGTGACAATTTGCTTGTTAATCTAAGGGATCCACAACGACCCATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGAAATACCCTTGTATCTGGGGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAGCTGTTGAATGGTAATAGCAGCCGGGTTTCTGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAGTTATTGACAGGAGAGGAACCTTATGCAGATATGCACTGTGGTGCCATTATTGGGGGCATTGTAAAGAACACACTTCGACCACCGATTCCAGAACGATGTGATCCTGAATGGAGAAAGCTTATGGAAGAGTGTTGGTCACGTGACCCCGAATATCGTCCATCGTTCACGGAGATAACAAACAGGTTAAGATCCATGTCTATGGCCCTTCAAGGAAAGGGAGATTATCAGACATGGCAATTGAGACCTAGTAATGTTTGA 3732 0.4065 MALNKTGNEHGLFPKYNQQESHSNVTNVHNSNNKNIPKEVGRVFASPDVSQNRESRFGLNRENDHVRYEDLTNILGLKRMDSESFYDIGECIPKQQPPAQEMENGVSANILSKGQKGDNNNGGLGALRKTYSESISEQIGTRPAVLSPVYLHKRSNSNGFSGSGILEDSSSGGKMKFLCSFGGKILPRPGDGKLRYVGGETHIISIQKDVSWEELMNKTLRICSQPHTIKYQLPGEDLDALISVSSDEDLQNMIEEYHGLESHEGSQKLRIFLVPFGESEETSSTDANTVLQNDPDYQYVVALNGIIDHSPRKNIGGQSLTNEANHSATSFSFAPTIASSPKEIRDGKNGMSGLNPDRILNDSVNLQSPLRISPTPVQVAGSTGYIQLLGGNSCQGSIDSNASFVTAQMHSGNSSINAADCRYPQQASVPRQHGDIGPPKNLNGQYFDNCIANNGYSDDVFGGTLHKDRIFSRNPIAQQTETYGTNNILSHGMTHAFSDSQLHPSGLKSIYCSQEGITPSFSLNLEKAELSSTVGVSQVNLIKGQHDPFLHHPQLQSKIPNVESAEMHRRQGVASSSPYSESVGTNDRINKDSILTEKKYLVAQTDLSGSNFVENDMQENPLKLERMMINEDKYPISKKDNNVYEGNSTVNYMSELHLLDTFSTNNISSQIGMQYNWDQPREDTPPSSSGMTGLSLNNLVDKTPSDLLDIGQKTSYGRNIDFPARNINLNSPISEHAENSRDKSSVRDDMFNFSFDPHSLKSAQVQPSQNQITTGFHDNPTIKSESLNPAVLHDDVRLIMVLPVDGLDNSRKNISFKKEPSLLNDFITNTDQMVDQFKHERSAFGLSKVESEILEQLKNSERSNNAKLVESFAVVEDATGVVPSNRKSSPVHTPRNFDKVGSDVSPSQTEVESTIPESDPEDYKDDQTDVNDFLSDATIAEMEASIYGLQIIRNTDLEELMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFGGRSSEQEQLAKDFWREAQILSNLHHPNVLAFYGIVPDGACGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPIPERCDPEWRKLMEECWSRDPEYRPSFTEITNRLRSMSMALQGKGDYQTWQLRPSNV 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04977 1243 PANTHER SERINE-THREONINE PROTEIN KINASE 227 1223 - -
Vifa1g04977 1243 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 194 276 - -
Vifa1g04977 1243 MobiDBLite consensus disorder prediction 882 926 - -
Vifa1g04977 1243 MobiDBLite consensus disorder prediction 11 35 - -
Vifa1g04977 1243 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 950 1044 - -
Vifa1g04977 1243 CDD STKc_MAP3K-like 963 1220 - -
Vifa1g04977 1243 ProSitePatterns Protein kinases ATP-binding region signature. 963 988 IPR017441 GO:0005524
Vifa1g04977 1243 SUPERFAMILY Protein kinase-like (PK-like) 945 1219 IPR011009 -
Vifa1g04977 1243 Gene3D Transferase(Phosphotransferase) domain 1 1045 1239 - -
Vifa1g04977 1243 SUPERFAMILY CAD & PB1 domains 191 281 - -
Vifa1g04977 1243 SMART serkin_6 957 1226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04977 1243 Gene3D - 193 275 - -
Vifa1g04977 1243 ProSiteProfiles Protein kinase domain profile. 957 1227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04977 1243 MobiDBLite consensus disorder prediction 331 354 - -
Vifa1g04977 1243 Pfam Protein tyrosine and serine/threonine kinase 960 1220 IPR001245 GO:0004672|GO:0006468
Vifa1g04977 1243 MobiDBLite consensus disorder prediction 900 914 - -
Vifa1g04977 1243 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1082 1094 IPR008271 GO:0004672|GO:0006468
Vifa1g04977 1243 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1045 1236 - -
Vifa1g04977 1243 Gene3D Phosphorylase Kinase; domain 1 950 1044 - -
Vifa1g04977 1243 Pfam PB1 domain 191 275 IPR000270 GO:0005515
Vifa1g04977 1243 PRINTS Tyrosine kinase catalytic domain signature 1076 1094 IPR001245 GO:0004672|GO:0006468
Vifa1g04977 1243 PRINTS Tyrosine kinase catalytic domain signature 1039 1052 IPR001245 GO:0004672|GO:0006468
Vifa1g04977 1243 PRINTS Tyrosine kinase catalytic domain signature 1191 1213 IPR001245 GO:0004672|GO:0006468
Vifa1g04977 1243 PRINTS Tyrosine kinase catalytic domain signature 1147 1169 IPR001245 GO:0004672|GO:0006468
Vifa1g04977 1243 SMART PB1_new 189 276 IPR000270 GO:0005515
Vifa1g04977 1243 CDD PB1_UP2 178 273 - -
Vifa1g04977 1243 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04977 Vifa-Chr1 777009715 777017408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04977 173 306 MAP Kinase Kinase Kinase AT1G16270 61.194 5.42e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vifa1g04977 PK_Tyr_Ser-Thr 4.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04977 - - gmx:100809991 1483.77