Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04973 ATGGATCCAGCGCCAATAATCAACCATCTTCCCAACACGCTGTCGTTTCACCCACCGGAGATCTGGCAGTTTCCACCGTCCACAACACCGTTGTTCGAGCAAGGCTTCGGAGCTTTCGCAACGGAACTTCCCGGTAGAGAACTGGTCGGTTCTGAGCTCAGACTTCCGAACCGTGGCCGGAAAAGATGCGACGCGGAGGAGGATTCTGTTAAAGGCGTTTCCACCAGCAACGACGTGAATGATGATGATGGTGGTGATGGGAAAAGGATTAAGACATCAGGGAAGAGTAAAGATGAAGAAGTTGCAGGAGAAGAAAACAGTTCAGGAAAGCATGCGGAAAAAACTACAGATGAGAGGCATCCTAAGCAAGATTATATTCATGTTCGGGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGCTAGAAGAGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGTTGCAACAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTTCATCACCAAGTAGAGTTTTTGTCGATGAAGCTGGAAGCAGTAAATTCAAGAATGACACCTGGTATGGAAGTGTTTCCTCCTAAAGTTTTTGATCAGCAAACATATGATACAACCCCTATACCATTTGCTTCACAAGCTACAAGAGAGTACAGCCGGGGTTCATCGCCAGAGTGGTTACATATGCAGGTGGGAGGTGGTTTTGAAAGATCAACGTAA 768 0.4544 MDPAPIINHLPNTLSFHPPEIWQFPPSTTPLFEQGFGAFATELPGRELVGSELRLPNRGRKRCDAEEDSVKGVSTSNDVNDDDGGDGKRIKTSGKSKDEEVAGEENSSGKHAEKTTDERHPKQDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRMTPGMEVFPPKVFDQQTYDTTPIPFASQATREYSRGSSPEWLHMQVGGGFERST 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04973 255 Pfam Helix-loop-helix DNA-binding domain 138 184 IPR011598 GO:0046983
Vifa1g04973 255 MobiDBLite consensus disorder prediction 81 123 - -
Vifa1g04973 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 184 IPR011598 GO:0046983
Vifa1g04973 255 MobiDBLite consensus disorder prediction 57 71 - -
Vifa1g04973 255 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 74 223 IPR024097 GO:0006355
Vifa1g04973 255 MobiDBLite consensus disorder prediction 57 123 - -
Vifa1g04973 255 CDD bHLH_AtBPE_like 124 209 - -
Vifa1g04973 255 Gene3D - 131 205 IPR036638 GO:0046983
Vifa1g04973 255 SMART finulus 140 190 IPR011598 GO:0046983
Vifa1g04973 255 FunFam Basic helix-loop-helix transcription factor 131 203 - -
Vifa1g04973 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 203 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04973 Vifa-Chr1 775923144 775925622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04973 1 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 50.649 4.02e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g04973 HLH 3.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04973 - - psat:127119455 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04973 1 775923144 775925622 Vifa1g04973 1 775923144 775925622 ECH
Vifa1g04973 1 775923144 775925622 Vifa1g04973 1 775923144 775925622 PCT