Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04967 ATGAACCACCGCGTGCCGTCGTCTCGAGCGGTTGGACTCGGCCGAGTCAAACCTCAAGCTCCTGGTAACCGCGCCATCTTATGTAACGATCGTCAAGCTAATCTTCCCCTTCGATTCACGGGGAATTCAATTTCGACTACGAAGTACAACTTCTTCACTTTTTTGCCAAAAGGATTGTTTGAGCAGTTCAGGCGGGTTGCTAATCTCTATTTTCTTACAATCTCGATTTTTTCGACCACACCGATCAGTCCAGTGTCTCCGATCACCAATGTGCTTCCTCTATCTATGGTGCTTCTGCTCTCTCTTATTAAGGAAGCTTTTGAGGACTGGAAGCGTTTTCAAAATGACATGATCATAAACAACAACACGGTAGATGTGTTGCAAGATAAAGAGTGGGTGTCTATACCTTGGAAAAAATTGCAAGTTGGCGACATTGTTAAGGTTAAGCAGGATGGATTCATTCCTGCAGATTTGCTTTTCCTCGCAAGTACAAATGTAGATGGTGTTTGTTACATCGAGACTGCTAATTTGGATGGGGAAACCAATTTGAAAATTAGAAAAGCATTGGAAAAGACTTGGTATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAATTAAGTGTGAACAACCAAACAATTCATTGTATACCTTCACTGGAAATCTAATAATTCAAGATCAAACACTTCCTCTCAGTCCAAATCAACTTCTGTTGCGAGGATGCAGCCTCAGGAATACAGGACATATTGTTGGGGTTGTTGTTTTCACTGGACATGAAACAAAGGTGATGATGAATGCTATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAGCTCGACAAGCTCATACTTGCTCTATTTGCAACTCTCTTCGTGATGTGTTTTATAGGAGCTGTAGGCAGTGCTATCTTTGTAAACAAGAAGTATTTCTATTTACATCTTGAATCATCATCAGAAGAGGAGGGCATGTCACAGTTCAATCCAAGAAATAGATTTTTGGTTTTTCTTCTGACTATGTTTACCTTCATCACTTTGTACTCAACAATTATCCCCATTTCACTCTATGTATCGATAGAGATGATCAAATTTATTCAGTCTACTCGATTTATCAACAATGACTTGCACATGTACCATTATGAAACTGATACCCCAGCATTGGCCAGAACTTCAAATCTGAATGAAGAGCTTGGGCAGGTTGAATACATCTTCTCAGACAAAACTGGGACTCTTACGCGGAACTTAATGGAGTTCTTCAAGTGCTCAATTGGAGGAGAGGTCTATGGAAATGGTGTAACTGAAACTGAGAAGGGAATAGCACAGCGCAGGGGCATAAAACTAGAGGAAAATATCTCACCCAATGCAGTGCGAGAGAGGGGTTTCAATTTTGATGATGCTAGGCTTATGGGAGGAGCTTGGAGGAATGAGCCAAATCCTGATAGCTGCAAGGAATTCTTCAGATGCCTTGCTATTTGTCATACTGTGCTTCCTGAGGGCGATGAGTTCCCTGATAAGATTAGATATCAAGCTGCATCACCAGATGAGTCTGCTTTGGTTATTGCCGCAAAGAATTTTGGGTTCTTCTTTTACAGACGCACACCAACAATGATATATATTCGTGAATCTCATGCTGAGAAGATGGGCAAAATTCAAGACCAGTCATATGAGATTTTGAATGTGCTTGAGTTTAACAGTACAAGGAAGCGCCAATCTGTTGTTTGCCGTTATCCAGATGGGAGGCTTGTATTGTACAGCAAGGGTGCTGATAATGTAATCTTTGAGAGATTAGCTGACAGTTCTAATGATATTAAAAAAGTGACTAGTGAACATTTGGAACAATTTGGATCTGCTGGACTACGCACATTATGCTTGGCGTACAAAGAATTACATCAAGATGTTTATGAAAGCTGGAATGAGAAGTTCATCCACGCCAAATCCTCTCTAATTGATCGGGAAAAGAAGTTAGATGAGGTGGCAGAACTTATAGAAAACGATCTCATTTTGATTGGTAGCACTGCCATAGAAGACAAGCTTCAAGATGGAGTACCGGCCTGCATAGATATTCTTCAAAGAGCTGGCATAAAAATTTGGGTGCTCACAGGGGACAAAATTGAAACAGCAATCAATATTGCCTATGCTTGCAATTTAATAAACAATGAGATGAAGCAGTTCATTATCAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGACAAAGGGGACCAAGTAGAAATTGCACGATTTATTAAAGAAGAAGTTATGAAAGAGCTGAAGAAGTGTTTAGAGGAAGTACAGAGCTATTTTAGCTCTCTATCTAGACCAAAATTAGCACTTGTAATTGATGGAAAATGTCTAATGTATGCACTGGATCCAAGTTTGAGAGTCATGCTGCTGAATTTAAGTTTGAATTGCCATGCTGTTGTTTGCTGCCGAGTTTCTCCCTTGCAGAAAGCACAGGTTACAACCTTGGTAAAGAAAGGTGCACGGAAAATAACACTTGGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGATGGAGGGGATGCAAGCTGTAATGGCTAGTGATTTTGCAATTGCACAGTTTCGCTATCTTGCAGATTTACTTCTTGTTCATGGCCGGTGGTCATATCTTAGAATATGCCAGGTGGTGATGTACTTCTTTTACAAGAATCTCACTTTCACTCTCACTCAGTTTTGGTTTAACTTTCAAACTGGGTTTTCTGGCCAAAGATTCTATGATGATTGGTTTCAGTCGTTGTATAATGTTATCTTCACTGCGTTGCCTGTGATCATTGTTGGTCTATTTGATAAGGACGTCAGTGCATCTCTATCCATGAAGTATCCTGAACTATACATGGAGGGAATAAAAAATGTCTTTTTCAAATGGAGAGTTGTGGCTATAAGGGCCTTTTTATCCGTTTACCAGTCTCTAATATTATTCTATTTTGTGAGTTCTTCGAGTCTAAGTGCTAAAGATTCAGCAGGCAAGATATTTGGACTCTGGGATGTTAGTACTATGGCCTTCACATGTGTCGTCGTAACTGTTAACTTGCGACTTATTCTATTTTCTAATTCAATCACAAGGGGGCACTATATTAGTGTCGGTGGAAGTATATTAGGATGGTTTATTTTTGCTTTCTTGTATTCAGGGATCAGAACTCGTTATGATAAACAGGAGAATGTGTATTTTGTCATATATGTCTTGATGAGTACAGTGTATTTCTACATTACGCTAATTCTTGTCCCTGTTTCGGCACTTTTTTGTGATTTCCTTTACCACGGGGTTCAGAGATGGTTCTTCCCTTATGATTATCAGATTATTCAAGAACTGCATAGACACGAGAATGATGACTCCGGAAGGAATCAATTGGTAGAGATAGGGAGCCAACTTACTCCAGATGAAGAAAGAAGCGATAACATATCTCAACTCCCGCGCTCGATATCAAAGCACACTGGTTTTGCTTTTGATTCACCTGGTTATGAGTCATTTTTTGCTTCACAGCTTGGTGTACATGCCCCTCAAAAGCCCTGGGATGTCGCAAGACGTGCTAGCATGAGATCCAAGCCGAAGATTGAGAAAAAATAG 3627 0.4017 MNHRVPSSRAVGLGRVKPQAPGNRAILCNDRQANLPLRFTGNSISTTKYNFFTFLPKGLFEQFRRVANLYFLTISIFSTTPISPVSPITNVLPLSMVLLLSLIKEAFEDWKRFQNDMIINNNTVDVLQDKEWVSIPWKKLQVGDIVKVKQDGFIPADLLFLASTNVDGVCYIETANLDGETNLKIRKALEKTWYYLTPEKASEFKGEIKCEQPNNSLYTFTGNLIIQDQTLPLSPNQLLLRGCSLRNTGHIVGVVVFTGHETKVMMNAMNVPSKRSTLERKLDKLILALFATLFVMCFIGAVGSAIFVNKKYFYLHLESSSEEEGMSQFNPRNRFLVFLLTMFTFITLYSTIIPISLYVSIEMIKFIQSTRFINNDLHMYHYETDTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGVTETEKGIAQRRGIKLEENISPNAVRERGFNFDDARLMGGAWRNEPNPDSCKEFFRCLAICHTVLPEGDEFPDKIRYQAASPDESALVIAAKNFGFFFYRRTPTMIYIRESHAEKMGKIQDQSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYSKGADNVIFERLADSSNDIKKVTSEHLEQFGSAGLRTLCLAYKELHQDVYESWNEKFIHAKSSLIDREKKLDEVAELIENDLILIGSTAIEDKLQDGVPACIDILQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFIISSETDAIREVEDKGDQVEIARFIKEEVMKELKKCLEEVQSYFSSLSRPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTTLVKKGARKITLGIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRICQVVMYFFYKNLTFTLTQFWFNFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSMKYPELYMEGIKNVFFKWRVVAIRAFLSVYQSLILFYFVSSSSLSAKDSAGKIFGLWDVSTMAFTCVVVTVNLRLILFSNSITRGHYISVGGSILGWFIFAFLYSGIRTRYDKQENVYFVIYVLMSTVYFYITLILVPVSALFCDFLYHGVQRWFFPYDYQIIQELHRHENDDSGRNQLVEIGSQLTPDEERSDNISQLPRSISKHTGFAFDSPGYESFFASQLGVHAPQKPWDVARRASMRSKPKIEKK 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04967 1208 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 413 675 IPR023299 GO:0000166
Vifa1g04967 1208 Pfam Cation transport ATPase (P-type) 510 597 - -
Vifa1g04967 1208 CDD P-type_ATPase_APLT_Dnf-like 41 997 - -
Vifa1g04967 1208 PRINTS P-type cation-transporting ATPase superfamily signature 837 856 - -
Vifa1g04967 1208 PRINTS P-type cation-transporting ATPase superfamily signature 406 420 - -
Vifa1g04967 1208 NCBIfam phospholipid-translocating P-type ATPase 39 1123 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa1g04967 1208 Pfam Phospholipid-translocating ATPase N-terminal 27 90 IPR032631 -
Vifa1g04967 1208 SFLD p-type atpase 388 888 IPR044492 -
Vifa1g04967 1208 FunFam Phospholipid-transporting ATPase 514 669 - -
Vifa1g04967 1208 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 26 1159 - -
Vifa1g04967 1208 Pfam E1-E2 ATPase 121 363 - -
Vifa1g04967 1208 ProSitePatterns E1-E2 ATPases phosphorylation site. 408 414 IPR018303 -
Vifa1g04967 1208 FunFam Phospholipid-transporting ATPase IC 403 415 - -
Vifa1g04967 1208 Gene3D - 667 877 IPR023214 -
Vifa1g04967 1208 Gene3D - 104 269 - -
Vifa1g04967 1208 Pfam Phospholipid-translocating P-type ATPase C-terminal 865 1115 IPR032630 -
Vifa1g04967 1208 SUPERFAMILY Calcium ATPase, transduction domain A 121 265 IPR008250 -
Vifa1g04967 1208 FunFam Phospholipid-transporting ATPase 100 269 - -
Vifa1g04967 1208 SFLD C1.7: P-type atpase like 388 888 - -
Vifa1g04967 1208 Gene3D - 521 657 IPR023299 GO:0000166
Vifa1g04967 1208 FunFam Phospholipid-transporting ATPase 670 877 - -
Vifa1g04967 1208 NCBIfam HAD-IC family P-type ATPase 810 916 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g04967 1208 SUPERFAMILY Calcium ATPase, transmembrane domain M 33 1115 IPR023298 -
Vifa1g04967 1208 SUPERFAMILY HAD-like 401 893 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04967 Vifa-Chr1 774983582 775005450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04967 2 1208 Primary Pumps ATPases AT1G59820 77.070 0.0 1978
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04967 K14802 - gmx:100815547 2122.44