Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04965 ATGGAGAAACAAGATCCATCTCAACCTACACATCAAGGTAATGAAAAGAAAAAACATTATAGAGGAGTTAGGCTGAGACCATGGGGAAAATGGGCAGCTGAAATAAGAGATCCTAAGAAAGGAGCAAGAGTATGGCTTGGCACATTTGAAACAGCTGAAGCTGCAGCTATTGCTTATGATGAAGCTGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTTAATTTCCCTCAACTCATTTCTCATTTGCCGGATTCGGATCCATTGCTCACGCGTAATAAAAATAACATTTCATCTTCATCTTCGCAGTGTGCTCCACCAAAATCTCTTTCTCCGTTGTCATCAACGGAAAAAGAGATGTTTCCAAACCTAATGCAATATGCGCAAGTACTTTGTAGTAAGGACGATGAAGATCTCCGACGTGCTACTACATGTCTTTACAATAATACTAATAATAATAGTAATCTTCACAATAATAATAATGAACGATTTCGTTATTATAATTTGCCGCCATTCTTCTCATCAATGGCACCATCTTCTACTTCTAAGGATGATGTTGTGTCTAGGGTTGGAGATGGTTGCCCTTTAGATACGAGGAATGGTCTTGATGAAAGGAACACAAAAGGGTCATAA 630 0.3873 MEKQDPSQPTHQGNEKKKHYRGVRLRPWGKWAAEIRDPKKGARVWLGTFETAEAAAIAYDEAALKFKGNKAKLNFPQLISHLPDSDPLLTRNKNNISSSSSQCAPPKSLSPLSSTEKEMFPNLMQYAQVLCSKDDEDLRRATTCLYNNTNNNSNLHNNNNERFRYYNLPPFFSSMAPSSTSKDDVVSRVGDGCPLDTRNGLDERNTKGS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04965 209 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Vifa1g04965 209 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g04965 209 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Vifa1g04965 209 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Vifa1g04965 209 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Vifa1g04965 209 PANTHER DNA-BINDING DOMAIN 9 143 IPR044808 GO:0003700|GO:0009873
Vifa1g04965 209 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Vifa1g04965 209 MobiDBLite consensus disorder prediction 84 113 - -
Vifa1g04965 209 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Vifa1g04965 209 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Vifa1g04965 209 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vifa1g04965 209 MobiDBLite consensus disorder prediction 87 113 - -
Vifa1g04965 209 MobiDBLite consensus disorder prediction 1 16 - -
Vifa1g04965 209 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Vifa1g04965 209 MobiDBLite consensus disorder prediction 177 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04965 Vifa-Chr1 774697681 774699144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04965 1 146 AP2-EREBP Transcription Factor Family AT5G13330 47.097 5.28e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g04965 AP2 7.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04965 - - tpra:123908943 265.774