Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04958 ATGTCTCTGTCCCGCACGTGCTCGCAGTGCGGCAACAACGGCCACAATTCTCGAACATGCAACGACGGTTGCAACGACGGAGGAGGAGAGAACAGCATCATGCTTTTCGGTGTTCGACTCACCGGGGGAAGCAACACAGCCACCACCAACCAACACAACCCGTTCAGAAAAAGCGCCAGCATGACCAATCTCTCTCAATACGATCAATCAACGCCTCAAGATTCCAACCCCGCCGACGCCGGTTATGTCTCCGATGACATCGTTCATGCCTCCGGTAGATCCCGTGAACGCAAGCGAGGTGTTCCTTGGACGGAAGAAGAACACAAGTTGTTCTTGTTGGGATTGCAACAGGTTGGTAGAGGTGATTGGAGAGGAATTTCTAGAAGCTTTGTTAAAACTCGCACACCAACTCAGGTGGCAAGTCATGCTCAGAAGTATTTCCTCCGCCGTCATAACCAGAACCGCCGCCGCCGGAGATCTAGTCTCTTTGATATCACCACCGATACAGTGATTGAATCTTCTACTATGATGGAAGAGCAATTTCAGCATGAAACGGCAGTGGCGCTGCCTCCACCTAGCCCCACCTTATATCCGTCGTCACATTACGGTGGCATTCCGGGGACACCTTTTCCGATGGGACTCAGTCCGGTAGCAATGCCGGTGATGAGTGGTGAAAGAGCAGGCAAGCCAGTTAGGCCAACACCAATGTTGCCTCCTTCCTCTAAGATGGCTAATTTGAATTTGAGAGAGAAAGCTTCTTCTTCTTCATCTTCCATTGAGCCATTGCCATTGTCATTGAAACTGCAACCTCCATCAAAGGAACATTCGCCGGATAGTAGCGGCCATTCGTCACCGTCGTCTTCATCGTCGGCTTTTAAAACTATTTCTGCAGGGAAGTATAGTGGTGGGGGTGGGGATAGCATTATCAGTGTTGCTTGA 939 0.5059 MSLSRTCSQCGNNGHNSRTCNDGCNDGGGENSIMLFGVRLTGGSNTATTNQHNPFRKSASMTNLSQYDQSTPQDSNPADAGYVSDDIVHASGRSRERKRGVPWTEEEHKLFLLGLQQVGRGDWRGISRSFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVIESSTMMEEQFQHETAVALPPPSPTLYPSSHYGGIPGTPFPMGLSPVAMPVMSGERAGKPVRPTPMLPPSSKMANLNLREKASSSSSSIEPLPLSLKLQPPSKEHSPDSSGHSSPSSSSSAFKTISAGKYSGGGGDSIISVA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04958 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Vifa1g04958 312 MobiDBLite consensus disorder prediction 249 312 - -
Vifa1g04958 312 CDD SANT 102 147 IPR001005 -
Vifa1g04958 312 FunFam transcription factor MYB1R1 101 152 - -
Vifa1g04958 312 ProSiteProfiles Zinc finger CCHC-type profile. 7 20 IPR001878 GO:0003676|GO:0008270
Vifa1g04958 312 MobiDBLite consensus disorder prediction 249 263 - -
Vifa1g04958 312 Gene3D - 101 152 - -
Vifa1g04958 312 ProSiteProfiles SANT domain profile. 98 151 IPR017884 -
Vifa1g04958 312 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Vifa1g04958 312 SMART sant 99 149 IPR001005 -
Vifa1g04958 312 MobiDBLite consensus disorder prediction 272 296 - -
Vifa1g04958 312 SUPERFAMILY Homeodomain-like 97 150 IPR009057 -
Vifa1g04958 312 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Vifa1g04958 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677
Vifa1g04958 312 PANTHER TRANSCRIPTION FACTOR KUA1 5 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04958 Vifa-Chr1 773379350 773381200 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g04958 Myb_DNA-binding 6.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04958 - - tpra:123909419 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04958 1 773379350 773381200 Vifa1g04958 1 773379350 773381200 ECH
Vifa1g04958 1 773379350 773381200 Vifa1g04958 1 773379350 773381200 PCT