Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04951 ATGGATAAGAATCTTGATGAACATTCCAACAGTTTCCCTCACGAAGATAAGGAAAACAACACCAATGCCGCCGACCACACACCTCGTTCTCCGTTGCTAGAGAGCGAGGACAATGTCGTCGACGGGGATGGAGAAACTGAAAAGGCCGGTGATGTAGATAATGTCGAGAGAGAGGCGGGAGATGAAAAGAAGGAGGAGGAGAATGAGGAAGGTGTATCCTTCGAGGATACACCTGAAACTCCTCCTCCAAACTTGGAGAAACTTTTAGAAGACATTGATAAATTCTTTGCTGCTACTACATATGATAACAATGACAATAACGAAGAGATGATTCCTGAATTCGTAGACAAGTTTCTATATCTAGTGGAAGAGAAAATCGCGAGGTACGACTCGAATCAAACAAAATGGGGTGAAACTGTGGAGGAAGATTCATTGTTGTTGGAAGGTGTGAACCGCGTCTCAAAGCTGGTGAAGTTTTTAACCACAATTATCACAGATTTTCAATCTGGAGAAGAAGAGAAAAAAGAAGGAGATGAAGAAGAAGATAAAAAAGGAGATGAAGAAGAAGAAAAGGAAGAGAAGAAAATAAAAAAGAATCATTCAGTATTGTTGAACCGCGTCGGCGCGATTCAACAACGAGCAATGGCGTATTTGGAGGAAGAGTTCCGGTTGTTAATGGAAGAATCTAGAATCCAAAACAAACCAGATTCGTCGCATGACGCTAAAGGGAAACACGCTGCAACACCGGAGCCGTCGGAAAATGAATCAGCAGAAACGTTTATGGATTTCCCGGGTTTTAAGGAGGAGGCGGTTACAATTTTGAACAAAATAGCGCGGGAGATGTTGTTTGCAGGTTATGATTCAGAATGCTGCCACCTGTACGCCGTTTCGAGAAAGCACGGTTTCGGAGACGGTTTATACAGGCTAGGGTACGAAAGGATCAGCATGGAAGAGGTTCATAAAATGCAATGGGAATCATTGGAGAGAGAGATTCCAACGTGGATCAACACGTTCAAAGAATGTGCCACCGTGTGGTTCCCCGGAGAACGGAAGCTCGCAGCGTCGATCTTCGCCGAGCATCTGTCTGTGGCGGACACACTCTACACCAACCTCACGCGCGTCGTGGTGTTTCAGCTTCTCAACTTTGCTGAAAGCGTGGCGATGACAAAACGTGCGGCGGAGAAGCTCTTCAAGTTTCTTGACATGTACGAAACCTTGAGAGACACAATTCCGAATCTGGACAAACTCTACCCGGAGGAAATCGTCTACGAAATCAAAGCTGAAATGACATCTGCAAAGAATCGCCTCGGCGAGGTTGCTGTGTTGATATTCTGCGAACTTGAAAACTCGATCAAATCGGATACTGGAAAAACTCCGGTCGCAGGCGGCGCTGTTCACCCGCTAACTCGCTACATCATAAACTACCTGAGACTCGCGTGCGAGTATAAAGACACATTGGAAGAAGTTTTCAAAGAGCATTCGAAGATCGAGCGAGCTGATTCAACAAGTAGGCCTAATTACGACAATCAAAGCCAAAACGAGAATCAGAAATCGAATGAGAAAGAACACGTGTCCCCGTTTGCCGCACAGTTGACACGTTTGATGGAATTACTCGACGCAAATCTTGAAGGAAAAGCAAAACTCTACAAAGAAGTACCATTAAGTTGCATCTTCATGATGAACAATGGAAGGTACATTGTTCAAAAAATCAAAGGATCAGGTGAAATCTACGCAGTAATGGGCGAAACATGGTGCCGTAAAAGATCCACAGAACTGAGAACTTACCACAAAAACTATCAAATAGAATCATGGAGCAAGATATTGAGTTGTTTAAGTCCAAAAGGTTTGAATGATAATGGGAAAGTTCATAAGCCGGTGCTGAAAGAAAGGTTCAAGAGTTTCAATGCATTGTTTGAGGAGATACATAAGACGCAAAGCACTTGGGTCGTGAGCGATGAACAGCTTCAATCTGAGCTAAGAGTTTCAATATCCGCACTCGTGATTCCTGCTTATAGATCATTTTTGGGTAGGTTTTCGCAGTATTTGGATCCAGGGAGACAAACAGAGAAATATATAAAATTTCAAGCTGAGGATATAGAGACTTACATTGATGAGTTGTTTGATGGGAATCCTCACCATCAAGCTATGGTGAGGAAGAAAGCATGA 2166 0.4354 MDKNLDEHSNSFPHEDKENNTNAADHTPRSPLLESEDNVVDGDGETEKAGDVDNVEREAGDEKKEEENEEGVSFEDTPETPPPNLEKLLEDIDKFFAATTYDNNDNNEEMIPEFVDKFLYLVEEKIARYDSNQTKWGETVEEDSLLLEGVNRVSKLVKFLTTIITDFQSGEEEKKEGDEEEDKKGDEEEEKEEKKIKKNHSVLLNRVGAIQQRAMAYLEEEFRLLMEESRIQNKPDSSHDAKGKHAATPEPSENESAETFMDFPGFKEEAVTILNKIAREMLFAGYDSECCHLYAVSRKHGFGDGLYRLGYERISMEEVHKMQWESLEREIPTWINTFKECATVWFPGERKLAASIFAEHLSVADTLYTNLTRVVVFQLLNFAESVAMTKRAAEKLFKFLDMYETLRDTIPNLDKLYPEEIVYEIKAEMTSAKNRLGEVAVLIFCELENSIKSDTGKTPVAGGAVHPLTRYIINYLRLACEYKDTLEEVFKEHSKIERADSTSRPNYDNQSQNENQKSNEKEHVSPFAAQLTRLMELLDANLEGKAKLYKEVPLSCIFMMNNGRYIVQKIKGSGEIYAVMGETWCRKRSTELRTYHKNYQIESWSKILSCLSPKGLNDNGKVHKPVLKERFKSFNALFEEIHKTQSTWVVSDEQLQSELRVSISALVIPAYRSFLGRFSQYLDPGRQTEKYIKFQAEDIETYIDELFDGNPHHQAMVRKKA 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04951 721 PANTHER EXOCYST COMPLEX PROTEIN EXO70 121 709 IPR004140 GO:0000145|GO:0006887
Vifa1g04951 721 MobiDBLite consensus disorder prediction 230 251 - -
Vifa1g04951 721 MobiDBLite consensus disorder prediction 495 523 - -
Vifa1g04951 721 MobiDBLite consensus disorder prediction 1 86 - -
Vifa1g04951 721 FunFam Exocyst subunit Exo70 family protein 130 715 - -
Vifa1g04951 721 Gene3D Exocyst complex component Exo70 183 716 - -
Vifa1g04951 721 Pfam Exo70 exocyst complex subunit 334 705 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa1g04951 721 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g04951 721 MobiDBLite consensus disorder prediction 230 257 - -
Vifa1g04951 721 MobiDBLite consensus disorder prediction 42 67 - -
Vifa1g04951 721 MobiDBLite consensus disorder prediction 169 195 - -
Vifa1g04951 721 SUPERFAMILY Cullin repeat-like 201 708 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04951 Vifa-Chr1 771594732 771596897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04951 75 710 EXO70 exocyst subunit family AT5G13990 49.323 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04951 K07195 - gmx:100819960 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00450 5 99586647 99588701 Vifa1g04951 1 771594732 771596897 PCT