Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04946 ATGACTTGTAACACATTGATGAGTTCAGCTATCTCAGCTTTTCCATCTCTTCTTTCTTCATCAAAATCAAGATTTGCAACTTCAATTCCACTTCGTTGTGTTGCTTCTACCAATGCTTCTAGATTCACCATGACTTCTGATTGGATGCCTGGTCAGCCTAGACCTTCCTATCTTGATGGTTCAGCTCCAGGTGACTTTGGATTTGATCCTCTTGGTCTTGGTTCAGTACCAGAGAATCTTGAGAGATTCAAAGAGTCTGAACTCATTCACTGCAGATGGGCAATGCTTGCTGTTCCAGGGATTTTGGTACCAGAGGCATTGGGGTTAGGGAACTGGGTAAAAGCACAGGAATGGGCAGCACTTCCTGGAGGACAAGCAACCTACTTAGGAAACCCTGTTCCATGGGGTACCCTACCCACCATTTTGGTCATTGAGTTCCTTTCTATTGCTTTTGTTGAACACCAAAGAAGTATGGAGAAAGACCCTGAAAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGTTACTCTAAAGACCCTAAAAAGTTCCATGAATACAAAATCAAAGAAGTTAAGAATGGCCGTCTCGCTTTGTTGGCTTTTGTTGGAATCTGTATTCAACAATCAGCATACCCAGGGACTGGACCTTTGGAAAATTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGAAATGTTCTTATTCCACCACAATAG 726 0.4298 MTCNTLMSSAISAFPSLLSSSKSRFATSIPLRCVASTNASRFTMTSDWMPGQPRPSYLDGSAPGDFGFDPLGLGSVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGICIQQSAYPGTGPLENLATHLADPWHNNIGNVLIPPQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04946 241 FunFam Chlorophyll a-b binding protein, chloroplastic 49 235 - -
Vifa1g04946 241 Gene3D Chlorophyll a/b binding protein domain 49 235 - -
Vifa1g04946 241 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 44 234 IPR001344 GO:0009765|GO:0016020
Vifa1g04946 241 SUPERFAMILY Chlorophyll a-b binding protein 40 237 - -
Vifa1g04946 241 Pfam Chlorophyll A-B binding protein 55 209 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04946 Vifa-Chr1 771101684 771103079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04946 1 196 Chloroplast and Mitochondria Gene Families AT3G54890 79.293 2.25e-107 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04946 K08907 - gmx:100305992 431.409