LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g04946	ATGACTTGTAACACATTGATGAGTTCAGCTATCTCAGCTTTTCCATCTCTTCTTTCTTCATCAAAATCAAGATTTGCAACTTCAATTCCACTTCGTTGTGTTGCTTCTACCAATGCTTCTAGATTCACCATGACTTCTGATTGGATGCCTGGTCAGCCTAGACCTTCCTATCTTGATGGTTCAGCTCCAGGTGACTTTGGATTTGATCCTCTTGGTCTTGGTTCAGTACCAGAGAATCTTGAGAGATTCAAAGAGTCTGAACTCATTCACTGCAGATGGGCAATGCTTGCTGTTCCAGGGATTTTGGTACCAGAGGCATTGGGGTTAGGGAACTGGGTAAAAGCACAGGAATGGGCAGCACTTCCTGGAGGACAAGCAACCTACTTAGGAAACCCTGTTCCATGGGGTACCCTACCCACCATTTTGGTCATTGAGTTCCTTTCTATTGCTTTTGTTGAACACCAAAGAAGTATGGAGAAAGACCCTGAAAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGTTACTCTAAAGACCCTAAAAAGTTCCATGAATACAAAATCAAAGAAGTTAAGAATGGCCGTCTCGCTTTGTTGGCTTTTGTTGGAATCTGTATTCAACAATCAGCATACCCAGGGACTGGACCTTTGGAAAATTTGGCAACTCACTTGGCTGATCCATGGCACAACAACATTGGAAATGTTCTTATTCCACCACAATAG	726	0.4298	MTCNTLMSSAISAFPSLLSSSKSRFATSIPLRCVASTNASRFTMTSDWMPGQPRPSYLDGSAPGDFGFDPLGLGSVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGICIQQSAYPGTGPLENLATHLADPWHNNIGNVLIPPQ	241

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g04946	241	FunFam	Chlorophyll a-b binding protein, chloroplastic	49	235	-	-
	Vifa1g04946	241	Gene3D	Chlorophyll a/b binding protein domain	49	235	-	-
	Vifa1g04946	241	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	44	234	IPR001344	GO:0009765\|GO:0016020
	Vifa1g04946	241	SUPERFAMILY	Chlorophyll a-b binding protein	40	237	-	-
	Vifa1g04946	241	Pfam	Chlorophyll A-B binding protein	55	209	IPR022796	-

Showing 1 to 5 of 5 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g04946	Vifa-Chr1	771101684	771103079	Dispersed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g04946	1	196	Chloroplast and Mitochondria Gene Families	AT3G54890	79.293	2.25e-107	306

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g04946	K08907		-	gmx:100305992	431.409

Showing 1 to 1 of 1 entries