Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04942 ATGACTACTAGCGACGAAGAGTTTCTTAACGAGCCCAGCGGTTTCACTCAAAGTTATGCCAAGAGCACATACGACGAGGCGAGCACCTCGGGGGCGTACGAATCCTCGTCGGGGGCACTGGAGCCAGAGGTTCCCGGTAATAGGGATGCTGAGGGATGGATCGAGAGGGCGCCGAAGAGCAATGGGCAATCTACATTCCGAACAAGAGGAGCTGAATCTACTCACGGTTTGAAGCTCGTCGGTTCCTGTGGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGGTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTATTTAATAGTTTGGAAACAACTGTCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAAGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTGTTATGATACACAGAGCCATTCTAGGATCAGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTTTGTGCCCTGTTTCTGAGAAATCACAAGCTTATGCTATGAAGGTTCGAGATCAGATTCACCAAGCAGGATATCATGTAGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGGCTGTTTGCCAGTGA 966 0.4524 MTTSDEEFLNEPSGFTQSYAKSTYDEASTSGAYESSSGALEPEVPGNRDAEGWIERAPKSNGQSTFRTRGAESTHGLKLVGSCGICCCRTVNQNYANILLMVLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTVAICFVCNRPENKLGDDETWDKAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYAMKVRDQIHQAGYHVDADTTDRKIQKKAVCQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04942 321 PANTHER THREONINE-TRNA LIGASE 156 317 - -
Vifa1g04942 321 MobiDBLite consensus disorder prediction 1 36 - -
Vifa1g04942 321 Gene3D - 269 319 IPR036621 -
Vifa1g04942 321 MobiDBLite consensus disorder prediction 1 70 - -
Vifa1g04942 321 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 166 265 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa1g04942 321 PRINTS Threonyl-tRNA synthetase signature 270 282 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04942 321 PRINTS Threonyl-tRNA synthetase signature 199 227 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04942 321 PRINTS Threonyl-tRNA synthetase signature 243 256 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa1g04942 321 Gene3D Bira Bifunctional Protein; Domain 2 125 268 IPR045864 -
Vifa1g04942 321 SUPERFAMILY Class II aaRS and biotin synthetases 137 262 IPR045864 -
Vifa1g04942 321 SUPERFAMILY Class II aaRS ABD-related 263 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04942 Vifa-Chr1 771077189 771084444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04942 90 159 RAD5 or RAD16-like Gene Family AT1G50410 67.143 1.05e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04942 K01868 - gmx:100812652 313.923