Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04939 ATGAAGGGATCAAGTTCAAAAGAAGAAGTAACAAGTGATGACGCCAAGATTTATATCCAAGAAATAAAGGATGCATTTAAAGACGAGAAGCATAAGTTCAATGAGTTTTTAAAGACCATGAAAGATATCAAGAAAAAAAGAGCTGAGATAGCGTGTATGCTGGCAAGAGTGAAGGAATTGTTTGAAGGACATAGAGAATTGTTATTAAAATTTAATACCTATTTATCAGATGAATTTGAAATCGCGCCTTCGACAGAGAAGTCAGAAGTGAAGAAACCAGAAGTAAATATAGAATATGCTAGGAAATATTTAGAGAAAGTGAAGACTCAATTTCAAGATGATCCTAATGTTTACCAATCCTTTCTAGCTATACTGAATATGTATAGAAAAAAAGAAAAGAGTAGCGAGGAGGTTTTACAAATGGTTATTTCACTTTTTAAAGACCAATCTGATCTTGTTGAAGGGTTTATTCAGTTTCTTCCATGA 486 0.3251 MKGSSSKEEVTSDDAKIYIQEIKDAFKDEKHKFNEFLKTMKDIKKKRAEIACMLARVKELFEGHRELLLKFNTYLSDEFEIAPSTEKSEVKKPEVNIEYARKYLEKVKTQFQDDPNVYQSFLAILNMYRKKEKSSEEVLQMVISLFKDQSDLVEGFIQFLP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04939 161 Gene3D Paired amphipathic helix 14 75 IPR036600 GO:0006355
Vifa1g04939 161 SUPERFAMILY PAH2 domain 5 77 IPR036600 GO:0006355
Vifa1g04939 161 PANTHER SIN3B-RELATED 11 161 IPR039774 GO:0003714
Vifa1g04939 161 Pfam Paired amphipathic helix repeat 117 160 IPR003822 GO:0006355
Vifa1g04939 161 Pfam Paired amphipathic helix repeat 32 75 IPR003822 GO:0006355
Vifa1g04939 161 FunFam Paired amphipathic helix SIN3-like protein 92 161 - -
Vifa1g04939 161 ProSiteProfiles PAH domain profile. 93 161 IPR003822 GO:0006355
Vifa1g04939 161 Gene3D Paired amphipathic helix 100 161 IPR036600 GO:0006355
Vifa1g04939 161 ProSiteProfiles PAH domain profile. 8 78 IPR003822 GO:0006355
Vifa1g04939 161 SUPERFAMILY PAH2 domain 91 161 IPR036600 GO:0006355
Vifa1g04939 161 FunFam Paired amphipathic helix protein Sin3 14 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04939 Vifa-Chr1 770244612 770245639 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04939 1 132 WRKY Transcription Factor Family AT4G12020 31.818 4.27e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g04939 PAH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04939 K11644 - psat:127121411 178.718