Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04937 ATGTCGCTGGAACCGTTGGATCGAAAGCGGAAGTACGAGAGCTCGGAGCCTCTAGGGACTGTGGTTAGATGGAGAGGCTCTTCTTCTCATCCTCACCACCACCACCACCACCGTCCTCAACAGTTCAATCGGCCTGGCAATTTTCGGAGAATGACAGGTCATCGTAGGCAGGGTAGTTGGCAGCCATTTCCAGAAGAATCTGGTCAAGAGCATATGCTGTCTCGACCTTGTGACAAAAAACTGGAGGAAGATAACTTTCGTTCTCGAGGGGATGGAAGGTATGGAAGGGTCTATAAGGAAAGTAGAGGAGCCTTTAGTCAGAGAGAATGGAAAGGGCGTCCATGGGAAAGCCCGAGCAACTCTCTTAATATGTCCAGGAGGCCAACTAATGCATTTAATGAACGCAAGTCAGTTGATGATATGCCAACAAATTCCCCTCATCCCAATTCTGGCTCATTAACTGCTTGGGAACAACACCACATGAAAGACCAGCATGATAAGATGGGTGGCATTAATCGATTTGGTACAGGGCAGAGATACGATAGGGATAGTTCTCTGGGTACGGTTGACTGGAAGCCACTTAAATGGACTCGGCCTGGATCTGTACGAGACTCAAGCTTTAGCCAATCAAGTGGCACAAGAAGCTCAGGAGGGGCTAATTCGAAGGGAAACTATGAAGGGAAGTATGGGTTACAACAAAAAGTTGCAACTACTGTTGAGTCAAATTCGAGGGAAGCTGCTATATGTCGTACATCTTCTGCACCATCTGAAGAGACAAATTCGAAGAAGAAGCCTAGGCTAAATTGGGGTGAGGGACTTGCAAAGTTTGAGAGGAAGCATGTTGAGGGACCTGAGGCAACTTCGAACAGAGATGGACCTGTCTCACCCCCTTTAAATATGGAACCCAGTAATTCCCTCTGTCCCAGCTTAGTCGATAAAAAGCCAAAAGTTTCAGAACTTTCAGGCCGTGCATCTCCTGCAGCTCCAACAACTGCTGCCCGCAGCTCTTCACCAGGTGTAGATGATAAATTGTTTGGAAAAGCTGTAAATATGGACAATGATGTTGGTAATTTGAGTAGTTCACCTGGCCGGGAGTCTCAAAATCATCTGCAGATCTTTTCTCTTAATTCAGAGAAGGTGGATATTAATTCACTGACTAGTTTGGGCTCTTCACTAGTTGAGTTACCACAGTCTGAAGATCTGAGCTCTGTGGATTATAATTCATTAAGATCCACTACACTGGATGAGTTGCTGACATTGAAAGCCGGCATTTCAAAGGTATTAGAGGTGACTGAAACTGAAATTGATTCACTTGAAAATGAACATAGATCTCTAAAATCTGAATCTGAGGGTAGATTTCCATGTTCAGCAGCAGTAGGCTCTCTGCTATGTTACAATGGAAAACCTTGCTCTGATGACAAGGTTTTCTGTTTAGAGTCATCGCCAATTGTATCTTCTGACGACCTTATTGTGGAGAAGGTGCCTATTGCGAAGAAGATGAATCTTGGTACTAACTTTGTTAATATACACGATAATTGCCTGGGAGATGATATTAACAGTCATGGACCTCCAAAGTCTAAAGTTGTAGAGCCTCTGCCCATAATTAATGCAGTTTTTTCATGTGATGTGAGGAGATATGGTTCTGGCTCAGAAGACTTGGGTGGAGTTCATTCTACAGCCATGCAATGCTTAATTCCCTGTACTAATAGGCAAGCTGCCAATGTCTCTGTTTGCGGTGATAGTAATTCATCTTTGAAAGTTAAAGATGGTGTGGGTGCTAAGAGAAGTGCAAACTCATATTCTAGAACCGAGGACAATTTATATGACAAAATCATTTCTTGCAATAAAAAATCTGCAAAAGCAGCACATGAAGTATTTGCTAAGTTATTGCCTGAAAAATGTTGCAAGAATGGTAACATTGGAGCTAGCACTGGTTCATGCTCTCAGAATGGCACATTTATTATGGAAAAAATTGCAGAGAAAAGACGAATGTCAAGATTGAAGGAGAGAGTTGCGACACTTAAGTATACAGCCCTGCATCACTTGTGGAAAGAAGATATGCGCTTACTGTCTATTAGGAAACAACGCCCAAAATCTCACAAGAAACTTGAAACCAGTTATAATAATCTGAAGAAGCGGTCTTCTATTTCTTTTCGTTTTCCCTTCCCAGGAAACCAACAAAGGTTGGTTCCAACATCTGAGTTGATTAAGTATACAAGCCAACTTCTTTCAGAATCCAAACACGAAATTCATAGAAGCACTTTAAAGATGCCGGCATTAATTTTGGATCAAAAGGACGAAATGAATTCAATATTTTCATCTAGTAATGGGCTGGTTGAAGATCCATTGGCTATTGAGAAAGAAAGAGCCATGATAAACCCTTGGACTTCAGAAGAGAGAGATATTTTCTTGAAGAAATTTTCTGCCTTTGGAAAAGATTTTCGGAAAATAGCTACCTTCCTTGACCACAAGACAACGGCAGACTGTGTTGAATTCTACTACAAAAATCACAAGTCTGATTGTTTTGGAAAAATTAAGAAAAAAGATGACGACAAGCTCAGAAAGTTTTATAAAGCCAAAACTAACTTGATGCCAACTGACTTGATGCCAAATACTTCTCCACTTGATATCTTGAGTGCAGCTTCAGTGATGGCAGATGACATTGCAAGAAATCGAAGAATGCGTTCAGGGCGTGCTCTTTGGAGAGGATATAACATGAGTAATAGGCTGAAAAGTTTTGAAGTTCTCCAAGATGAAAGAGAGACTGTTGCAGCTGATGTGTTAACTAGTATATGTGGTTCTGTTTTATCTGAGGCAACAAGTTCCTGCATAACTAGTTCAGTCAATCCTGTGAAAGGCAAAAGGGTCAGGAAGTGTGTGAAAGCAAAGCCTCTACGGAAACCACCTCCGACGCCAGAAATTACCCAAACTATTGATCATGAAACTTGTTCGGATGAGAGCTGTGGTGAAGTTGATCTTACTGACTGGACAGATGTGGAGAAGGCGGCCTTTCTTCATGCTGTATCATCCTTTGGAAAGGATTTTGCAATGATCGCGCAGTGTGTCAGAACAAGATCCCAATATCATTGCAAAGTCTTTTTCAGCAAGACTCAGAAACGTCTCAGATTGAATCTCATGGGTCACAGACCTGAAAATGTTAGATCATTGGGGGATGATGATGTGGATGGTGGCAGGAGTGACACAGATATTGCATGCATTGTAGAGACAGGTTCAGCCAATGGCTCTGATACGTCAGGCACTAAAACTGGTGTGGACCAGCCTGCAGCTGATACGAACATGTATCATGATGAATCCAATCCTGTAAAAGCTAGCAACATGTCAGCTGACTTAGATGAATCAGAGGAAACTAATGGGAAAGTAGATCATGAAGATGTAAATATGATTTCTGATGCATGTGCGATTGGGGGTCTGGCTCAGTGCGGGCTCAAGATGAACCAAGCGAAGGGGGAATTGCAGGGAAATGAATTGGAGGGTTCAACAATATGTCTAGTTGATAAAGATGAGGCTGATACAGATGTTGGAGTTCAATTGAACGATACTAGCACTTTGGTGAATACTTCACTATCATCTACGGAAGTTTCTTGTTCAAGATTGACTGTTGATGCTGGAAATGAGCCCCAACCACGCCTTGAAAAACCTCCATTCTCAGGATCATCAGAGGGTCCTCTTACAAATGCAAATCTTGGCTACCAGCTTTGTAATCCTGGTAATTCATTGGACCATGTTGAGGCTGCCAGAGTCCATCAGTGCTGTAATTTGCAAGTGCATTCTAAGAAGGAAATGAATGTGAATATGAGCTGCAGCAGTTCAGCAACTGAGTTGCCTCTTTTGTCCCAAAAGAATGAGCATTACCAAAGCGTGCAGGGTTTGTCAGATTCAGAAGAAGCACCCCGAAATGATGTGAAAATATTCGGGAAGATACTGACCATTCCTTCAGCCACCCTGAAGCCTAATTTAAGTGTAAAGGGAAATGACGAAAATGGTACCTATAGTCCGAAGTTAAATACTGCCTCTTCTAGTCTGAAACTAACCAGCCGTGCTAATGCTGGTGGAAAAGTCCCTGTGTTGGAGGTTGATCTGAATGACTGCCAGGTCATTGAAAATGTTCCCGTTGCAAGTTATATTATCAATGGGAACAAAATTCAGCCTGGTTTGTCTTCCCTCCCTGATTCTGAAATTTTGCTTGCAAAATATCCTGCTGCATTTGGTAGTTATCCTACAACTGCCAGATTAGAGCAAGAGTCATTGCAGGCATTGGCCAACAATAATGATAAACAACACCTAGACGAAGCATCTTCTTTTCCAACTGGAGAAGTCAATGGAAGATATGGTGTGCCTGATTATCAGATATTCAGAGACAGGGAAGATCTGATTGCCCAGCCACTCATGGAAGGTGACCTGCAAATAAGAAATAATTTTGAAGCAATCCCAAGTTTGCAGCAGCAGGTTACAGAAATGGTGGGGACAAATGCTATTGGAAAGCCAGAGATTCTTGTTGGAGAATCCAAAAGTGTTTCCTCGGATCCTTTGGCAGCCATCAAATGA 4566 0.4233 MSLEPLDRKRKYESSEPLGTVVRWRGSSSHPHHHHHHRPQQFNRPGNFRRMTGHRRQGSWQPFPEESGQEHMLSRPCDKKLEEDNFRSRGDGRYGRVYKESRGAFSQREWKGRPWESPSNSLNMSRRPTNAFNERKSVDDMPTNSPHPNSGSLTAWEQHHMKDQHDKMGGINRFGTGQRYDRDSSLGTVDWKPLKWTRPGSVRDSSFSQSSGTRSSGGANSKGNYEGKYGLQQKVATTVESNSREAAICRTSSAPSEETNSKKKPRLNWGEGLAKFERKHVEGPEATSNRDGPVSPPLNMEPSNSLCPSLVDKKPKVSELSGRASPAAPTTAARSSSPGVDDKLFGKAVNMDNDVGNLSSSPGRESQNHLQIFSLNSEKVDINSLTSLGSSLVELPQSEDLSSVDYNSLRSTTLDELLTLKAGISKVLEVTETEIDSLENEHRSLKSESEGRFPCSAAVGSLLCYNGKPCSDDKVFCLESSPIVSSDDLIVEKVPIAKKMNLGTNFVNIHDNCLGDDINSHGPPKSKVVEPLPIINAVFSCDVRRYGSGSEDLGGVHSTAMQCLIPCTNRQAANVSVCGDSNSSLKVKDGVGAKRSANSYSRTEDNLYDKIISCNKKSAKAAHEVFAKLLPEKCCKNGNIGASTGSCSQNGTFIMEKIAEKRRMSRLKERVATLKYTALHHLWKEDMRLLSIRKQRPKSHKKLETSYNNLKKRSSISFRFPFPGNQQRLVPTSELIKYTSQLLSESKHEIHRSTLKMPALILDQKDEMNSIFSSSNGLVEDPLAIEKERAMINPWTSEERDIFLKKFSAFGKDFRKIATFLDHKTTADCVEFYYKNHKSDCFGKIKKKDDDKLRKFYKAKTNLMPTDLMPNTSPLDILSAASVMADDIARNRRMRSGRALWRGYNMSNRLKSFEVLQDERETVAADVLTSICGSVLSEATSSCITSSVNPVKGKRVRKCVKAKPLRKPPPTPEITQTIDHETCSDESCGEVDLTDWTDVEKAAFLHAVSSFGKDFAMIAQCVRTRSQYHCKVFFSKTQKRLRLNLMGHRPENVRSLGDDDVDGGRSDTDIACIVETGSANGSDTSGTKTGVDQPAADTNMYHDESNPVKASNMSADLDESEETNGKVDHEDVNMISDACAIGGLAQCGLKMNQAKGELQGNELEGSTICLVDKDEADTDVGVQLNDTSTLVNTSLSSTEVSCSRLTVDAGNEPQPRLEKPPFSGSSEGPLTNANLGYQLCNPGNSLDHVEAARVHQCCNLQVHSKKEMNVNMSCSSSATELPLLSQKNEHYQSVQGLSDSEEAPRNDVKIFGKILTIPSATLKPNLSVKGNDENGTYSPKLNTASSSLKLTSRANAGGKVPVLEVDLNDCQVIENVPVASYIINGNKIQPGLSSLPDSEILLAKYPAAFGSYPTTARLEQESLQALANNNDKQHLDEASSFPTGEVNGRYGVPDYQIFRDREDLIAQPLMEGDLQIRNNFEAIPSLQQQVTEMVGTNAIGKPEILVGESKSVSSDPLAAIK 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04937 1521 SUPERFAMILY Homeodomain-like 994 1042 IPR009057 -
Vifa1g04937 1521 Coils Coil 421 448 - -
Vifa1g04937 1521 Gene3D - 771 842 - -
Vifa1g04937 1521 ProSiteProfiles SANT domain profile. 790 841 IPR017884 -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 113 154 - -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 234 256 - -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 201 222 - -
Vifa1g04937 1521 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 9 1165 - -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 257 286 - -
Vifa1g04937 1521 SUPERFAMILY Homeodomain-like 778 838 IPR009057 -
Vifa1g04937 1521 CDD SANT 996 1034 IPR001005 -
Vifa1g04937 1521 SMART sant 992 1040 IPR001005 -
Vifa1g04937 1521 SMART sant 791 839 IPR001005 -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 1 154 - -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 27 43 - -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 166 341 - -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 1206 1228 - -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 292 306 - -
Vifa1g04937 1521 ProSiteProfiles SANT domain profile. 991 1042 IPR017884 -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 1 16 - -
Vifa1g04937 1521 Gene3D - 967 1049 - -
Vifa1g04937 1521 MobiDBLite consensus disorder prediction 71 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04937 Vifa-Chr1 769633902 769642864 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g04937 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04937 - - psat:127126546 2446