Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04936 ATGTCGCTGGAACCGTTGGATCGAAAGCGGAAGTACGAGAGCTCGGAGCCTCTAGGGACTGTGGTTAGATGGAGAGGCTCTTCTTCTCATCCTCACCACCACCACCACCACCGTCCTCAACAGTTCAATCGGCCTGGCAATTTTCGGAGAATGACAGGTCATCGTAGGCAGGGTAGTTGGCAGCCATTTCCAGAAGAATCTGGTCAAGAGCATATGCTGTCTCGACCTTGTGACAAAAAACTGGAGGAAGATAACTTTCGTTCTCGAGGGGATGGAAGGTATGGAAGGGTCTATAAGGAAAGTAGAGGAGCCTTTAGTCAGAGAGAATGGAAAGGGCGTCCATGGGAAAGCCCGAGCAACTCTCTTAATATGTCCAGGAGGCCAACTAATGCATTTAATGAACGCAAGTCAGTTGATGATATGCCAACAAATTCCCCTCATCCCAATTCTGGCTCATTAACTGCTTGGGAACAACACCACATGAAAGACCAGCATGATAAGATGGGTGGCATTAATCGATTTGGTACAGGGCAGAGATACGATAGGGATAGTTCTCTGGGTACGGTTGACTGGAAGCCACTTAAATGGACTCGGCCTGGATCTGTACGAGACTCAAGCTTTAGCCAATCAAGTGGCACAAGAAGCTCAGGAGGGGCTAATTCGAAGGGAAACTATGAAGGGAAGTATGGGTTACAACAAAAAGTTGCAACTACTGTTGAGTCAAATTCGAGGGAAGCTGCTATATGTCGTACATCTTCTGCACCATCTGAAGAGACAAATTCGAAGAAGAAGCCTAGGCTAAATTGGGGTGAGGGACTTGCAAAGTTTGAGAGGAAGCATGTTGAGGGACCTGAGGCAACTTCGAACAGAGATGGACCTGTCTCACCCCCTTTAAATATGGAACCCAGTAATTCCCTCTGTCCCAGCTTAGTCGATAAAAAGCCAAAAGTTTCAGAACTTTCAGGCCGTGCATCTCCTGCAGCTCCAACAACTGCTGCCCGCAGCTCTTCACCAGGTGTAGATGATAAATTGTTTGGAAAAGCTGTAAATATGGACAATGATGTTGGTAATTTGAGTAGTTCACCTGGCCGGGAGTCTCAAAATCATCTGCAGATCTTTTCTCTTAATTCAGAGAAGGTGGATATTAATTCACTGACTAGTTTGGGCTCTTCACTAGTTGAGTTACCACAGTCTGAAGATCTGAGCTCTGTGGATTATAATTCATTAAGATCCACTACACTGGATGAGTTGCTGACATTGAAAGCCGGCATTTCAAAGGTATTAGAGGTGACTGAAACTGAAATTGATTCACTTGAAAATGAACATAGATCTCTAAAATCTGAATCTGAGGGTAGATTTCCATGTTCAGCAGCAGTAGGCTCTCTGCTATGTTACAATGGAAAACCTTGCTCTGATGACAAGGTTTTCTGTTTAGAGTCATCGCCAATTGTATCTTCTGACGACCTTATTGTGGAGAAGGTGCCTATTGCGAAGAAGATGAATCTTGGTACTAACTTTGTTAATATACACGATAATTGCCTGGGAGATGATATTAACAGTCATGGACCTCCAAAGTCTAAAGTTGTAGAGCCTCTGCCCATAATTAATGCAGTTTTTTCATGTGATGTGAGGAGATATGGTTCTGGCTCAGAAGACTTGGGTGGAGTTCATTCTACAGCCATGCAATGCTTAATTCCCTGTACTAATAGGCAAGCTGCCAATGTCTCTGTTTGCGGTGATAGTAATTCATCTTTGAAAGTTAAAGATGGTGTGGGTGCTAAGAGAAGTGCAAACTCATATTCTAGAACCGAGGACAATTTATATGACAAAATCATTTCTTGCAATAAAAAATCTGCAAAAGCAGCACATGAAGTATTTGCTAAGTTATTGCCTGAAAAATGTTGCAAGAATGGTAACATTGGAGCTAGCACTGGTTCATGCTCTCAGAATGGCACATTTATTATGGAAAAAATTGCAGAGAAAAGACGAATGTCAAGATTGAAGGAGAGAGTTGCGACACTTAAGTATACAGCCCTGCATCACTTGTGGAAAGAAGATATGCGCTTACTGTCTATTAGGAAACAACGCCCAAAATCTCACAAGAAACTTGAAACCAGTTATAATAATCTGAAGAAGCGGTCTTCTATTTCTTTTCGTTTTCCCTTCCCAGCAGGAAACCAACAAAGGTTGGTTCCAACATCTGAGTTGATTAAGTATACAAGCCAACTTCTTTCAGAATCCAAACACGAAATTCATAGAAGCACTTTAAAGATGCCGGCATTAATTTTGGATCAAAAGGACGAAATGAATTCAATATTTTCATCTAGTAATGGGCTGGTTGAAGATCCATTGGCTATTGAGAAAGAAAGAGCCATGATAAACCCTTGGACTTCAGAAGAGAGAGATATTTTCTTGAAGAAATTTTCTGCCTTTGGAAAAGATTTTCGGAAAATAGCTACCTTCCTTGACCACAAGACAACGGCAGACTGTGTTGAATTCTACTACAAAAATCACAAGTCTGATTGTTTTGGAAAAATTAAGAAAAAAGATGACGACAAGCTCAGAAAGTTTTATAAAGCCAAAACTAACTTGATGCCAACTGACTTGATGCCAAATACTTCTCCACTTGATATCTTGAGTGCAGCTTCAGTGATGGCAGATGACATTGCAAGAAATCGAAGAATGCGTTCAGGGCGTGCTCTTTGGAGAGGATATAACATGAGTAATAGGCTGAAAAGTTTTGAAGTTCTCCAAGATGAAAGAGAGACTGTTGCAGCTGATGTGTTAACTAGTATATGTGGTTCTGTTTTATCTGAGGCAACAAGTTCCTGCATAACTAGTTCAGTCAATCCTGTGAAAGGCAAAAGGGTCAGGAAGTGTGTGAAAGCAAAGCCTCTACGGAAACCACCTCCGACGCCAGAAATTACCCAAACTATTGATCATGAAACTTGTTCGGATGAGAGCTGTGGTGAAGTTGATCTTACTGACTGGACAGATGTGGAGAAGGCGGCCTTTCTTCATGCTGTATCATCCTTTGGAAAGGATTTTGCAATGATCGCGCAGTGTGTCAGAACAAGATCCCAATATCATTGCAAAGTCTTTTTCAGCAAGACTCAGAAACGTCTCAGATTGAATCTCATGGGTCACAGACCTGAAAATGTTAGATCATTGGGGGATGATGATGTGGATGGTGGCAGGAGTGACACAGATATTGCATGCATTGTAGAGACAGGTTCAGCCAATGGCTCTGATACGTCAGGCACTAAAACTGGTGTGGACCAGCCTGCAGCTGATACGAACATGTATCATGATGAATCCAATCCTGTAAAAGCTAGCAACATGTCAGCTGACTTAGATGAATCAGAGGAAACTAATGGGAAAGTAGATCATGAAGATGTAAATATGATTTCTGATGCATGTGCGATTGGGGGTCTGGCTCAGTGCGGGCTCAAGATGAACCAAGCGAAGGGGGAATTGCAGGGAAATGAATTGGAGGGTTCAACAATATGTCTAGTTGATAAAGATGAGGCTGATACAGATGTTGGAGTTCAATTGAACGATACTAGCACTTTGGTGAATACTTCACTATCATCTACGGAAGTTTCTTGTTCAAGATTGACTGTTGATGCTGGAAATGAGCCCCAACCACGCCTTGAAAAACCTCCATTCTCAGGATCATCAGAGGGTCCTCTTACAAATGCAAATCTTGGCTACCAGCTTTGTAATCCTGGTAATTCATTGGACCATGTTGAGGCTGCCAGAGTCCATCAGTGCTGTAATTTGCAAGTGCATTCTAAGAAGGAAATGAATGTGAATATGAGCTGCAGCAGTTCAGCAACTGAGTTGCCTCTTTTGTCCCAAAAGAATGAGCATTACCAAAGCGTGCAGGGTTTGTCAGATTCAGAAGAAGCACCCCGAAATGATGTGAAAATATTCGGGAAGATACTGACCATTCCTTCAGCCACCCTGAAGCCTAATTTAAGTGTAAAGGGAAATGACGAAAATGGTACCTATAGTCCGAAGTTAAATACTGCCTCTTCTAGTCTGAAACTAACCAGCCGTGCTAATGCTGGTGGAAAAGTCCCTGTGTTGGAGGTTGATCTGAATGACTGCCAGGTCATTGAAAATGTTCCCGTTGCAAGTTATATTATCAATGGGAACAAAATTCAGCCTGGTTTGTCTTCCCTCCCTGATTCTGAAATTTTGCTTGCAAAATATCCTGCTGCATTTGGTAGTTATCCTACAACTGCCAGATTAGAGCAAGAGTCATTGCAGGCATTGGCCAACAATAATGATAAACAACACCTAGACGAAGCATCTTCTTTTCCAACTGGAGAAGTCAATGGAAGATATGGTGTGCCTGATTATCAGATATTCAGAGACAGGGAAGATCTGATTGCCCAGCCACTCATGGAAGGTGACCTGCAAATAAGAAATAATTTTGAAGCAATCCCAAGTTTGCAGCAGCAGGTTACAGAAATGGTGGGGACAAATGCTATTGGAAAGCCAGAGATTCTTGTTGGAGAATCCAAAAGTGTTTCCTCGGATCCTTTGGCAGCCATCAAATGA 4569 0.4235 MSLEPLDRKRKYESSEPLGTVVRWRGSSSHPHHHHHHRPQQFNRPGNFRRMTGHRRQGSWQPFPEESGQEHMLSRPCDKKLEEDNFRSRGDGRYGRVYKESRGAFSQREWKGRPWESPSNSLNMSRRPTNAFNERKSVDDMPTNSPHPNSGSLTAWEQHHMKDQHDKMGGINRFGTGQRYDRDSSLGTVDWKPLKWTRPGSVRDSSFSQSSGTRSSGGANSKGNYEGKYGLQQKVATTVESNSREAAICRTSSAPSEETNSKKKPRLNWGEGLAKFERKHVEGPEATSNRDGPVSPPLNMEPSNSLCPSLVDKKPKVSELSGRASPAAPTTAARSSSPGVDDKLFGKAVNMDNDVGNLSSSPGRESQNHLQIFSLNSEKVDINSLTSLGSSLVELPQSEDLSSVDYNSLRSTTLDELLTLKAGISKVLEVTETEIDSLENEHRSLKSESEGRFPCSAAVGSLLCYNGKPCSDDKVFCLESSPIVSSDDLIVEKVPIAKKMNLGTNFVNIHDNCLGDDINSHGPPKSKVVEPLPIINAVFSCDVRRYGSGSEDLGGVHSTAMQCLIPCTNRQAANVSVCGDSNSSLKVKDGVGAKRSANSYSRTEDNLYDKIISCNKKSAKAAHEVFAKLLPEKCCKNGNIGASTGSCSQNGTFIMEKIAEKRRMSRLKERVATLKYTALHHLWKEDMRLLSIRKQRPKSHKKLETSYNNLKKRSSISFRFPFPAGNQQRLVPTSELIKYTSQLLSESKHEIHRSTLKMPALILDQKDEMNSIFSSSNGLVEDPLAIEKERAMINPWTSEERDIFLKKFSAFGKDFRKIATFLDHKTTADCVEFYYKNHKSDCFGKIKKKDDDKLRKFYKAKTNLMPTDLMPNTSPLDILSAASVMADDIARNRRMRSGRALWRGYNMSNRLKSFEVLQDERETVAADVLTSICGSVLSEATSSCITSSVNPVKGKRVRKCVKAKPLRKPPPTPEITQTIDHETCSDESCGEVDLTDWTDVEKAAFLHAVSSFGKDFAMIAQCVRTRSQYHCKVFFSKTQKRLRLNLMGHRPENVRSLGDDDVDGGRSDTDIACIVETGSANGSDTSGTKTGVDQPAADTNMYHDESNPVKASNMSADLDESEETNGKVDHEDVNMISDACAIGGLAQCGLKMNQAKGELQGNELEGSTICLVDKDEADTDVGVQLNDTSTLVNTSLSSTEVSCSRLTVDAGNEPQPRLEKPPFSGSSEGPLTNANLGYQLCNPGNSLDHVEAARVHQCCNLQVHSKKEMNVNMSCSSSATELPLLSQKNEHYQSVQGLSDSEEAPRNDVKIFGKILTIPSATLKPNLSVKGNDENGTYSPKLNTASSSLKLTSRANAGGKVPVLEVDLNDCQVIENVPVASYIINGNKIQPGLSSLPDSEILLAKYPAAFGSYPTTARLEQESLQALANNNDKQHLDEASSFPTGEVNGRYGVPDYQIFRDREDLIAQPLMEGDLQIRNNFEAIPSLQQQVTEMVGTNAIGKPEILVGESKSVSSDPLAAIK 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04936 1522 SUPERFAMILY Homeodomain-like 779 839 IPR009057 -
Vifa1g04936 1522 Gene3D - 968 1050 - -
Vifa1g04936 1522 Coils Coil 421 448 - -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 113 154 - -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 234 256 - -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 201 222 - -
Vifa1g04936 1522 Gene3D - 772 843 - -
Vifa1g04936 1522 ProSiteProfiles SANT domain profile. 791 842 IPR017884 -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 257 286 - -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 1 154 - -
Vifa1g04936 1522 SUPERFAMILY Homeodomain-like 995 1043 IPR009057 -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 27 43 - -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 166 341 - -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 292 306 - -
Vifa1g04936 1522 SMART sant 993 1041 IPR001005 -
Vifa1g04936 1522 SMART sant 792 840 IPR001005 -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 1 16 - -
Vifa1g04936 1522 CDD SANT 997 1035 IPR001005 -
Vifa1g04936 1522 ProSiteProfiles SANT domain profile. 992 1043 IPR017884 -
Vifa1g04936 1522 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 9 1166 - -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 1207 1229 - -
Vifa1g04936 1522 MobiDBLite consensus disorder prediction 71 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04936 Vifa-Chr1 769633902 769642864 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g04936 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04936 - - psat:127126546 2452.17