Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04931 ATGAAGGGATCAAGTTCAAAAGAAGAAGTAACAAGTAATGACACCAAGATTTATATCAAAGAAATAAAAGATGCATTTAAAGATGACAAGAATAAGTTCAATGAGTTTTTAAAGACTATGAAAGATATCAAGAAAAAAAGAGGTAACATAGTGTGCATGCTGGCAAAAGTAAAGGAATTGTTTGAAGGGCATAGAGAATTGTTACTGAAATTTAATACCTATTTGCCAAATGAATTTGAGATTACATTTCCACCAGAGAAGCCAGAAATAAATATAGAATATGCTAAGAAATATTTAGGCAAGGTGAAGACTCGATTTCAAGATGATCCTGACATTTACCGGTCATTTATAGCTATAATGAATATGTATAGAAACAAAAAAAGGAGTGGTGAAGAGGTTCAACAAATGGTGTTTTCACTTTTTAAAGACCATCCTGATCTTGTTGATGGATTTATTGAGTTTCTTCCGTGA 471 0.3142 MKGSSSKEEVTSNDTKIYIKEIKDAFKDDKNKFNEFLKTMKDIKKKRGNIVCMLAKVKELFEGHRELLLKFNTYLPNEFEITFPPEKPEINIEYAKKYLGKVKTRFQDDPDIYRSFIAIMNMYRNKKRSGEEVQQMVFSLFKDHPDLVDGFIEFLP 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04931 156 FunFam Paired amphipathic helix SIN3-like protein 87 156 - -
Vifa1g04931 156 Pfam Paired amphipathic helix repeat 111 155 IPR003822 GO:0006355
Vifa1g04931 156 Pfam Paired amphipathic helix repeat 32 75 IPR003822 GO:0006355
Vifa1g04931 156 Gene3D Paired amphipathic helix 95 156 IPR036600 GO:0006355
Vifa1g04931 156 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355
Vifa1g04931 156 PANTHER SIN3B-RELATED 11 156 IPR039774 GO:0003714
Vifa1g04931 156 SUPERFAMILY PAH2 domain 5 77 IPR036600 GO:0006355
Vifa1g04931 156 SUPERFAMILY PAH2 domain 85 156 IPR036600 GO:0006355
Vifa1g04931 156 ProSiteProfiles PAH domain profile. 88 156 IPR003822 GO:0006355
Vifa1g04931 156 ProSiteProfiles PAH domain profile. 6 78 IPR003822 GO:0006355
Vifa1g04931 156 FunFam Paired amphipathic helix protein Sin3 14 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04931 Vifa-Chr1 769041893 769042625 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04931 1 107 WRKY Transcription Factor Family AT4G12020 35.514 1.12e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g04931 PAH 2.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04931 K11644 - psat:127121411 166.777