Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04928 ATGGATCAGTGTACTAAAAATGCAGTAGAATTTTTAAAAGAAATAAAGGGTAGATTAACTCAAGATAAGTATGATAAGTTTGTGAAAGCCTTCAAGGATTATAGGGCACAAAGGATTGAGGTTTTTGATCTTATGGATAAAATGAAGGAAATATTCAAAGGTCAAAGAGATTTGATATTGAGATTAAACAACTTTATGCCAATTGGATACGAAGTGGAACTTCCATTGGAAGATGAACAATCTCTGCCAAAGAAGCATGTCAAATTGGAAGATGCTACACGTTTTTTGAATAAGATAAAGGCTCAGTTCCATGGAGTTGATGATCATTCTTACAGGTCATTTATGAAAATATTAATTATCTACTATAAGAAAAATATCTCTTTCGCTATGGTCTGTAAAGAGGCTACTACACTTTTGCAAGGCCATCCTGACCTTCTTGATGAATTTTATGATTTTCTCCCAAAAGCTATTTCTGCTCATTATGTGGGTGGTCGGAATCCTGTGCGTGGAGATATATAG 519 0.341 MDQCTKNAVEFLKEIKGRLTQDKYDKFVKAFKDYRAQRIEVFDLMDKMKEIFKGQRDLILRLNNFMPIGYEVELPLEDEQSLPKKHVKLEDATRFLNKIKAQFHGVDDHSYRSFMKILIIYYKKNISFAMVCKEATTLLQGHPDLLDEFYDFLPKAISAHYVGGRNPVRGDI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04928 172 Gene3D Paired amphipathic helix 7 67 IPR036600 GO:0006355
Vifa1g04928 172 ProSiteProfiles PAH domain profile. 85 156 IPR003822 GO:0006355
Vifa1g04928 172 PANTHER SIN3B-RELATED 4 156 IPR039774 GO:0003714
Vifa1g04928 172 SUPERFAMILY PAH2 domain 5 67 IPR036600 GO:0006355
Vifa1g04928 172 ProSiteProfiles PAH domain profile. 1 69 IPR003822 GO:0006355
Vifa1g04928 172 Pfam Paired amphipathic helix repeat 110 153 IPR003822 GO:0006355
Vifa1g04928 172 Pfam Paired amphipathic helix repeat 22 65 IPR003822 GO:0006355
Vifa1g04928 172 SUPERFAMILY PAH2 domain 83 155 IPR036600 GO:0006355
Vifa1g04928 172 Gene3D Paired amphipathic helix 84 157 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04928 Vifa-Chr1 768591235 768592048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04928 5 79 WRKY Transcription Factor Family AT4G12020 28.947 2.40e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g04928 PAH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04928 K11644 - psat:127121395 281.182