Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04927 ATGGATATACTGAAGATGAGAGAGGAAATAACATGTTTTTGGACTATTGTTATGGACTGGTTTACAAGGCCATTTTGCAGAGGTTGCAGAGGATGTAGGGGTAGCATTGCAAGCTTTATGGACAGACTTGAGCAGGACTGTAATAGCAGATCTGGCCGACGTGTTATGGATCAGTGTACTAAAAACGCCATAGAATTTTTAAAAGAAATAAAGGGTAGATTAATTCAAGATAAGTATGATAAGTTTGTGAAAGCGTTCAAGGATTATAGGGCACAAAGGATTGAGGTTTTTGATCTTATGGATAAAATGAAGGAAATATTCAAAGGTCAAAGAGATTTGATATTGAGATTAAACAACTTTATGCCAATTGGATATGAAGTGGAACTTCCATTGGAAGATGAACAATCTCTGCCAAAGAAGCATGTCAAATTGGAAGATGCTACACGTTTTTTGAATAAGATAAAGGCTCAGCTTCGAGGAGTTGATTATCATACTTACACGTCATTTATGAAGATATTAATCATGTACTATAAGAAAAATAAGTCTTTCGCTATGGTCTGCACAGAGGTTACTACACTTTTGCAAGGCCATCCTGACCTTCTTGATGAGTTTTATCATTTTCTTCCAAAGGCTATTTCTGGTCATTATGTTGCTGCTAGGAATGTTGTGCGTCGAGATATATAG 684 0.3626 MDILKMREEITCFWTIVMDWFTRPFCRGCRGCRGSIASFMDRLEQDCNSRSGRRVMDQCTKNAIEFLKEIKGRLIQDKYDKFVKAFKDYRAQRIEVFDLMDKMKEIFKGQRDLILRLNNFMPIGYEVELPLEDEQSLPKKHVKLEDATRFLNKIKAQLRGVDYHTYTSFMKILIMYYKKNKSFAMVCTEVTTLLQGHPDLLDEFYHFLPKAISGHYVAARNVVRRDI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04927 227 Gene3D Paired amphipathic helix 62 122 IPR036600 GO:0006355
Vifa1g04927 227 ProSiteProfiles PAH domain profile. 53 124 IPR003822 GO:0006355
Vifa1g04927 227 Pfam Paired amphipathic helix repeat 77 120 IPR003822 GO:0006355
Vifa1g04927 227 Pfam Paired amphipathic helix repeat 164 208 IPR003822 GO:0006355
Vifa1g04927 227 ProSiteProfiles PAH domain profile. 140 211 IPR003822 GO:0006355
Vifa1g04927 227 FunFam Paired amphipathic helix SIN3-like protein 139 211 - -
Vifa1g04927 227 Gene3D Paired amphipathic helix 139 212 IPR036600 GO:0006355
Vifa1g04927 227 SUPERFAMILY PAH2 domain 138 210 IPR036600 GO:0006355
Vifa1g04927 227 PANTHER SIN3B-RELATED 58 211 IPR039774 GO:0003714
Vifa1g04927 227 SUPERFAMILY PAH2 domain 60 122 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04927 Vifa-Chr1 768529269 768535237 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04927 60 134 WRKY Transcription Factor Family AT4G12020 28.947 2.04e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g04927 PAH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04927 K11644 - psat:127121395 289.656