Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04926 ATGGGGAAAAAAGGAAGTTGGTTTTCTGCAGTGAAGAAAGTTTTCAGTCATGATTCCAGAAAAGACAAGAAAAGTCAGAAATCAAAGAAAAAAAGTATTCGACAGGACACAGAAGTGAAATCAGAAGAAGTACAAGTTCCTGTTATTCCAGAGATAGAAGATGTGAAATTAAGTGAGTTAGAGAATGAACAAAATAAACAGGCTGTTTCTCTTGCCTTTGCCACTGCTGCTGCGGCGGGTGTGGCTGTTGCTGCTGCTCAGGCTGCTACCGAGGTTGTTCGTCTCACGAGTATGCCTCATTACCCTGCAAAGACTATGGAAGAATTGGCTGTTATAAAGATTCAGACAGTGTTCCGCGGATATATGGCGAGAAGAGCTTTGCGCGCCTTGAGAGGTTTGGTGAGGTTGAAGACAACGATACAAGGACAATCTGTTAAACGGCAAGCAGACAGCACCTTAAGATGTATGCAAACTCTAGCAAGATTGCAGTCACAGGTCCGCGAAAGGCGAATTCGAATGTCCGAAGAGAATCAGGCTCGTCAGCGGCAACTACAACAGAAACACGGAAAAGAACTTGTGAAGCTGCAATCTTCTGTTGGAGAAGAATGGGATGATAGCTTGCGGTCAAAGGAACAAATTGATGCAACATTATTGCAAAGACAAGAAGCTGCTTTCAAAAGAGAGAGGGCTTTGGCCTATTCATTTTCACACCAGCAAACATGGAGGAGCTCTTCAAAATCTACAAACCAAACATTTATGGATCCAAACAATCCTCACTGGGGATGGAGTTGGTTAGAGAGATGGATGGCGACTCGACCATGGGAAGTCGAAAGCATTATTATGAATCACAAACCTTCTCCGGTTGGGAAGAAATTAATAAGACAAAGCACTCAGAATTCTCCTTCAACTTCAAAGACAAAGCCATCAAGTTCAAAGGGTGAAACTATTGATGACTCAAGAAGTATGTTTAGTGCTCAATCCGAACGGTATCCAAGATATAGTAGCATTGCTGGATCGTCGGTTAGAGATGACGCGAGCGTTGAAAGCTCGCCGGTGTTTCCAAGTTACATGGCACTCACTAGTTCGGCAAAGGCAAAGTCCAAACTAATGCAAAAAACATCACCATCCACATCTTCGATTTCTGCAAGGAAGAGGCTTTCTTTCCCTGCTTCGCCTGTTGGTTCGAGAAGGCACTCCGATCCACCTAAGGTGGAAATATAA 1221 0.4365 MGKKGSWFSAVKKVFSHDSRKDKKSQKSKKKSIRQDTEVKSEEVQVPVIPEIEDVKLSELENEQNKQAVSLAFATAAAAGVAVAAAQAATEVVRLTSMPHYPAKTMEELAVIKIQTVFRGYMARRALRALRGLVRLKTTIQGQSVKRQADSTLRCMQTLARLQSQVRERRIRMSEENQARQRQLQQKHGKELVKLQSSVGEEWDDSLRSKEQIDATLLQRQEAAFKRERALAYSFSHQQTWRSSSKSTNQTFMDPNNPHWGWSWLERWMATRPWEVESIIMNHKPSPVGKKLIRQSTQNSPSTSKTKPSSSKGETIDDSRSMFSAQSERYPRYSSIAGSSVRDDASVESSPVFPSYMALTSSAKAKSKLMQKTSPSTSSISARKRLSFPASPVGSRRHSDPPKVEI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04926 406 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Vifa1g04926 406 Pfam IQ calmodulin-binding motif 110 128 IPR000048 GO:0005515
Vifa1g04926 406 MobiDBLite consensus disorder prediction 16 43 - -
Vifa1g04926 406 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Vifa1g04926 406 MobiDBLite consensus disorder prediction 363 406 - -
Vifa1g04926 406 MobiDBLite consensus disorder prediction 363 385 - -
Vifa1g04926 406 SMART iq_5 106 128 IPR000048 GO:0005515
Vifa1g04926 406 MobiDBLite consensus disorder prediction 293 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04926 Vifa-Chr1 768527571 768529400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04926 1 405 IQD Protein Family AT5G03040 46.239 1.91e-117 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04926 - - cam:101501235 484.567