Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04925 ATGGGGAAAAAAGGAAGTTGGTTTTCTGCAGTGAAGAAAGTTTTCAGTCATGATTCCAGAAAAGACAAGAAAAGTCAGAAATCAAAGAAAAAAAGTATTCGACAGGACACAGAAGTGAAATCAGAAGAAGTACAAGTTCCTGTTATTCCAGAGATAGAAGATGTGAAATTAAGTGAGTTAGAGAATGAACAAAATAAACAGGCTGTTTCTCTTGCCTTTGCCACTGCTGCTGCGGCGGGTGTGGCTGTTGCTGCTGCTCAGGCTGCTACCGAGGTTGTTCGTCTCACGAGTATGCCTCATTACCCTGCAAAGACTATGGAAGAATTGGCTGTTATAAAGATTCAGACAGTGTTCCGCGGATATATGGCGAGAAGAGCTTTGCGCGCCTTGAGAGGTTTGGTGAGGTTGAAGACAACGATACAAGGACAATCTGTTAAACGGCAAGCAGACAGCACCTTAAGATGTATGCAAACTCTAGCAAGATTGCAGTCACAGGTCCGCGAAAGGCGAATTCGAATGTCCGAAGAGAATCAGGCTCGTCAGCGGCAACTACAACAGAAACACGGAAAAGAACTTGTGAAGCTGCAATCTTCTCAGGTTGGAGAAGAATGGGATGATAGCTTGCGGTCAAAGGAACAAATTGATGCAACATTATTGCAAAGACAAGAAGCTGCTTTCAAAAGAGAGAGGGCTTTGGCCTATTCATTTTCACACCAGCAAACATGGAGGAGCTCTTCAAAATCTACAAACCAAACATTTATGGATCCAAACAATCCTCACTGGGGATGGAGTTGGTTAGAGAGATGGATGGCGACTCGACCATGGGAAGTCGAAAGCATTATTATGAATCACAAACCTTCTCCGGTTGGGAAGAAATTAATAAGACAAAGCACTCAGAATTCTCCTTCAACTTCAAAGACAAAGCCATCAAGTTCAAAGGGTGAAACTATTGATGACTCAAGAAGTATGTTTAGTGCTCAATCCGAACGGTATCCAAGATATAGTAGCATTGCTGGATCGTCGGTTAGAGATGACGCGAGCGTTGAAAGCTCGCCGGTGTTTCCAAGTTACATGGCACTCACTAGTTCGGCAAAGGCAAAGTCCAAACTAATGCAAAAAACATCACCATCCACATCTTCGATTTCTGCAAGGAAGAGGCTTTCTTTCCCTGCTTCGCCTGTTGGTTCGAGAAGGCACTCCGATCCACCTAAGGTGGAAATATAA 1224 0.4371 MGKKGSWFSAVKKVFSHDSRKDKKSQKSKKKSIRQDTEVKSEEVQVPVIPEIEDVKLSELENEQNKQAVSLAFATAAAAGVAVAAAQAATEVVRLTSMPHYPAKTMEELAVIKIQTVFRGYMARRALRALRGLVRLKTTIQGQSVKRQADSTLRCMQTLARLQSQVRERRIRMSEENQARQRQLQQKHGKELVKLQSSQVGEEWDDSLRSKEQIDATLLQRQEAAFKRERALAYSFSHQQTWRSSSKSTNQTFMDPNNPHWGWSWLERWMATRPWEVESIIMNHKPSPVGKKLIRQSTQNSPSTSKTKPSSSKGETIDDSRSMFSAQSERYPRYSSIAGSSVRDDASVESSPVFPSYMALTSSAKAKSKLMQKTSPSTSSISARKRLSFPASPVGSRRHSDPPKVEI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04925 407 PANTHER IQ-DOMAIN 5-RELATED 1 402 - -
Vifa1g04925 407 Pfam IQ calmodulin-binding motif 110 128 IPR000048 GO:0005515
Vifa1g04925 407 MobiDBLite consensus disorder prediction 364 407 - -
Vifa1g04925 407 MobiDBLite consensus disorder prediction 364 386 - -
Vifa1g04925 407 MobiDBLite consensus disorder prediction 16 43 - -
Vifa1g04925 407 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Vifa1g04925 407 MobiDBLite consensus disorder prediction 174 189 - -
Vifa1g04925 407 MobiDBLite consensus disorder prediction 294 329 - -
Vifa1g04925 407 MobiDBLite consensus disorder prediction 174 198 - -
Vifa1g04925 407 SMART iq_5 106 128 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04925 Vifa-Chr1 768527571 768529400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04925 1 406 IQD Protein Family AT5G03040 46.137 2.96e-117 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04925 - - cam:101501235 491.115