Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04922 ATGAATAATTTGAGATCTGGCCGACGTGTTATGGATCAGTGTACTAAAAATGCAGTAGAATTTTTAAAAGAAATAAAAGGTAGATTAACTCAAGATAAGTATGATAAGTTTGTGAAAGCCTTCAAGGATTATAGGGCACAAAGGATTGAGGTTTTTGATCTTATGGATAAAATGAAGGAAATATTCAAAGGTCAAAGAGATTTGATATTGAGATTAAACAACTTTATGCCAATTGGATACGAAGTCGAACTTCCATTGGAAGATGAACAATCTCTGCCAAAGAAGCATGTCAAATTGGAAGATGCTACACGTTTTTTGAATAAGATAAAGGCTCAGCTTCGAGGAGTTGATTATCATACTTACACGTCATTTATGAAGATATTAATCATGTACTATAAGAAAAATAAGTCTTTCGCTATGGTCTGCACAGAGGTTACTACACTTTTGCAAGGCCATCCTGACCTTCTTGATGAGTTTTATCATTTTCTTCCAAAGGCTATTTCTGGTCATTATGTTGCTGCTAGGAATGTTGTGCGTCGAGATATATAG 549 0.3443 MNNLRSGRRVMDQCTKNAVEFLKEIKGRLTQDKYDKFVKAFKDYRAQRIEVFDLMDKMKEIFKGQRDLILRLNNFMPIGYEVELPLEDEQSLPKKHVKLEDATRFLNKIKAQLRGVDYHTYTSFMKILIMYYKKNKSFAMVCTEVTTLLQGHPDLLDEFYHFLPKAISGHYVAARNVVRRDI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04922 182 ProSiteProfiles PAH domain profile. 8 79 IPR003822 GO:0006355
Vifa1g04922 182 FunFam Paired amphipathic helix SIN3-like protein 94 166 - -
Vifa1g04922 182 Gene3D Paired amphipathic helix 17 77 IPR036600 GO:0006355
Vifa1g04922 182 Pfam Paired amphipathic helix repeat 119 163 IPR003822 GO:0006355
Vifa1g04922 182 Pfam Paired amphipathic helix repeat 32 75 IPR003822 GO:0006355
Vifa1g04922 182 SUPERFAMILY PAH2 domain 93 165 IPR036600 GO:0006355
Vifa1g04922 182 SUPERFAMILY PAH2 domain 15 77 IPR036600 GO:0006355
Vifa1g04922 182 ProSiteProfiles PAH domain profile. 95 166 IPR003822 GO:0006355
Vifa1g04922 182 Gene3D Paired amphipathic helix 94 167 IPR036600 GO:0006355
Vifa1g04922 182 PANTHER SIN3B-RELATED 14 166 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04922 Vifa-Chr1 768470565 768471596 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04922 15 89 WRKY Transcription Factor Family AT4G12020 28.947 2.56e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g04922 PAH 9.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04922 K11644 - psat:127121395 289.271