Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04915 ATGAAGCGGTCACGAGAGGAGGGTTTTATGACGACTTCTTCTCAGCTTAAACGACCTATGTTATCTTCTAGAGGAGAAGCTAGAGGAGAAGCGTCTGGGCAATCCCTGATGGTTAATGGAGGTGGTCAAAAACTGACTACTAATGATGCCTTATCGTATCTCAAGGCAGTAAAGGATATTTTTCAAGATAAGAGGGATAAATATGAAGATTTTTTGGAGGTCATGAAAGATTTTAAAGCACAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGATCTTTTTAGAGGTCATAGAGATTTAATATTGGGATTTAACACCTTTTTGCCAAAGGGGTATGAAATCACCCTTCCGAACGAGGATGATCAACCTCACTCAAAAAAGCCTGTTGAATTTGAAGAAGCTATGAGTTTTGTGAACAAGATAAAGACTCGATTTCATGGTGATGATCATGTTTACAAGGCATTTCTAGACATATTGAATATGTACAGAAAGGAAAATAAGTCTATCGACGCAGTCTACCAGGAGGTTGCTGCACTCTTCCAAGACCACCCGGATCTTCTTGATGGGTTTATTCATTTTCTTCCCGACGTTTCCGCTGCTGCCTCTGCTCATACTGTTGCTCGGAATTCTGGGTTTCGAGATAGGAGCTCTGCAATGCCAACAGTGCGGCAAGTGCATCTTGAAAAGAGAGAAAGGACCATTGTTTCACATGGTGACCGTGACACCAGTGTTGACCGTCCTGACCCAGATCATGATGGAAATTTGTTGAGGGCAGAAAAGGAGCATAAGAGACGTGTGGAGAAGGAGAAGAACCGTAGAGAAGATAGAGACAAGAGAAAACGGGAACGAAGTGATAGAGATGAGCAGGGCAGGGGTCGAGATAGGGAGCGGTTATCCCAGAAACAGAAATTTGATCATATGGCTGAAGACTCGGGAGCTGAACCATTGCATGATGCAGATCAAAATTTTGGTGTGTATAGTCAAGAGTTAGCTTTCTGTGATCAAGTCAAAGAGAGATTACGAAATCCTGACAGCTACCAGGAATTTTTGAAGTGTTTACATATTTACAGCCGGGAGATTATTACTCGACAAGAATTGCAGTCACTGGTGGGTGATTTACTGGGAAAGTATCCAGATCTTATCGAAGGGTTTAATGAATTTTTGCTACAAGCTGAGAAGAATGATGGTGGATTCCTTGCTGGCGTCATGAATAAGAGACATGGACTGAAACCAATGAAGGCTGGACAGAGAGATAGGGATCACGATAAAGATCGTTACAGGGATGATAGTATGAAAGAAAGGGATCGTGAATTCCGAGAAAGGGACAAATGTTCTATAATTTCCAACAAGGATGTTTCAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATCTCTCTAAACCAATAAATGAGCTGGACCTTTCTAACTGTGAACGATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCTATTGCTAGCCAGAGAACAGAAATTGGCGCGGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAATATGAAGAGAGTTTGTTTAGATGCGAAGATGACAGGTTCGAGCTTGATATGTTGTTAGAATCTGTAAATGTGACAACTAAACGAGTACAAGAATTGTTAGAAAAGATCAACAAAAGTCTACTAAAAGGAGACAGCCCGATTCGTATTGAGGAGCACTTAACAGCTCTAAACTTTAGGTGTATTGAACGAATATATGGTGACCATGGTCTTGATGTGTTGGAAGTGCTAAAGAAGAACGCGTCTCTAGCTTTGCCAGTGATATTAGCACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGATGTCGTGCCGATTTCAGTAAAGTTTGGGCTGAAATATATGCCAAGAATTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGACACCAAAAGCTTGAGCACCAAAGCCTTGCTGTCCGAAATCAAAGAAATCAGTGAGAAGAAACACAAAGAAGACGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTATTCTTCCAAACCTGGAGTTTGAATATCTTGATACAGACATCCATGAAGACTTGTATCAGCTTATAAAATATTCATGTGGAGAAGTTTGCACAACTGAGCAGTTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTACCTTGTCGGCCCCAGGGTGCTGAGGATACTGAAGATGCTGTGGCTAAGAGTAATTCTGGGAGAAACGTTGCTGAAAGTGATGGTAGTCCTGGTGTTGGTGCCACCATAATGAGCCCAAAGCATATAAATACTTCTAGAAATGGTGATGACTGTTTGCCGTTAGACGAGTCAACTTCTAGCAAAGCATGGCAGTCAAATGGTGATACTGGGATTATAGAAGATAAATGTCTTGATTCAGACCATAGAGTGCATAAAAGTGAAGCCTTTTGCAATAATCTGCAAAACGGTAAACCGGATATAATTGCGTTTGTGCCTAATGAGCTATCAGGAGTCGATAATGTCTCACCAGCATCTGGAATGGAGCTAAGTAATAAAAGAATAAAGATAGATAATGCATCAGGACTTGCTGTTACTCCATCTAGAAATGATAATGTGTCTGTCACGGGAGGACATGAATTGCCTTCATCACAGGGTGGTGATTCTGCCAGAGCAGGTACTTCCACAAATGGGGCCATTGCTGGAGGCACTGACGTTTGCAGGTATCAAGAGGAATCAAATCGACAGTTCAAAAGCGAAAGAGAAGAGGTGCATAAAGGAAAAGATGATGGTGTGAATCAGCAATACCAAAATAGGCCTGGGGAAGAAGTTGGTGGTGAAGCCAGACGAGAAAATTATGTGGATGCTGATGATGAATGCGAAGAAAGTCCTCAGAGGTCGTCAGAGGACAGTGAAAATGCTTCTGAAAATGTTGATGTGTCTGGAAGCGAATCTGCTGACGGCGATGAGTGTTCTCGAGAAGAGCATGAGGATGGAGAACATGATAGTAAGGCTGAAAGTGAAGGTGAAGCTGAAGTTGTGGCTGATGTGCATGACGTTGAAGGAGATGGAACGTCATTACCATTTTCTGAACGCTTTCTTCTAAACGTGAAACCATTGACAAAGCATGTTCCCTCAGTGTTACATGTGAAAGACAGGAATTCTCAAGTTTTTTATGGAAATGACTCCTTTTATGTGCTGATTAGACTTCATCAGACATTGTATGAAAGAATACAATCAGCAAAGGTTAACTCATCATCAGCTGAAAGGAAATGGAGGGCTTCAAACGATACAAGCTCTACTAATCAATATGACAGGTTCATGAATGCGCTTTACAGTTTGCTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACATTAGACAAACTGATATATAAACTTGTTAAACAGCTTCAGGCTGTTGCGAGCGATGAGATCGATAATAAGCTTCTTCAACTAAATGCATATGAGAAATCAAGAAAACTTGGAAAGTTTTTCGATATAGTTTATCACGAAAATGCTCGCTTTCTTCTTCATGATGAGAACATATATCGTATTGAATTTTCACCAAAACCAAAGACACTATCGATTCAACTTATGGACTGTGGTAATGTTAAACATGAAGTGACTACTGCTGTGGCGGTGGACCCAAACTTTTCAGCCTATCTGCTTAATGAATTCCTCTCTGTCCCGGACCAAAAGACGTCAGGGATTTTCCTGAAAAGGAATAAACATGGATATGCCGGTAATGATGAGTTGTCAAGCCAGGTTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGTAAGATAGCTAGCAATTCTTCCAAGGTGTCGTATGTTTTAGATACAGAAGACTTCATGTTTCGGATGAGAAACAGAAGAAAAGCTTTGCGTCTAAAGGGTTCACGCCATGAACAAGAAAAGTCTTCAAACATTCGATCAAGCAGAGCAGCAAGGTTCCACAATCTGCTTTCCTTCACATGA 4113 0.4094 MKRSREEGFMTTSSQLKRPMLSSRGEARGEASGQSLMVNGGGQKLTTNDALSYLKAVKDIFQDKRDKYEDFLEVMKDFKAQRIDTAGVIARVKDLFRGHRDLILGFNTFLPKGYEITLPNEDDQPHSKKPVEFEEAMSFVNKIKTRFHGDDHVYKAFLDILNMYRKENKSIDAVYQEVAALFQDHPDLLDGFIHFLPDVSAAASAHTVARNSGFRDRSSAMPTVRQVHLEKRERTIVSHGDRDTSVDRPDPDHDGNLLRAEKEHKRRVEKEKNRREDRDKRKRERSDRDEQGRGRDRERLSQKQKFDHMAEDSGAEPLHDADQNFGVYSQELAFCDQVKERLRNPDSYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLIEGFNEFLLQAEKNDGGFLAGVMNKRHGLKPMKAGQRDRDHDKDRYRDDSMKERDREFRERDKCSIISNKDVSGSKMSLYPSKDKYLSKPINELDLSNCERCTPSYRLLPKNYPIPIASQRTEIGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVQELLEKINKSLLKGDSPIRIEEHLTALNFRCIERIYGDHGLDVLEVLKKNASLALPVILARLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLSEIKEISEKKHKEDDVLLAIAAGNRRPILPNLEFEYLDTDIHEDLYQLIKYSCGEVCTTEQLDKVMKVWTTFLEPMLCVPCRPQGAEDTEDAVAKSNSGRNVAESDGSPGVGATIMSPKHINTSRNGDDCLPLDESTSSKAWQSNGDTGIIEDKCLDSDHRVHKSEAFCNNLQNGKPDIIAFVPNELSGVDNVSPASGMELSNKRIKIDNASGLAVTPSRNDNVSVTGGHELPSSQGGDSARAGTSTNGAIAGGTDVCRYQEESNRQFKSEREEVHKGKDDGVNQQYQNRPGEEVGGEARRENYVDADDECEESPQRSSEDSENASENVDVSGSESADGDECSREEHEDGEHDSKAESEGEAEVVADVHDVEGDGTSLPFSERFLLNVKPLTKHVPSVLHVKDRNSQVFYGNDSFYVLIRLHQTLYERIQSAKVNSSSAERKWRASNDTSSTNQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVASDEIDNKLLQLNAYEKSRKLGKFFDIVYHENARFLLHDENIYRIEFSPKPKTLSIQLMDCGNVKHEVTTAVAVDPNFSAYLLNEFLSVPDQKTSGIFLKRNKHGYAGNDELSSQVMEGLQIINGLECKIASNSSKVSYVLDTEDFMFRMRNRRKALRLKGSRHEQEKSSNIRSSRAARFHNLLSFT 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04915 1370 Coils Coil 258 278 - -
Vifa1g04915 1370 ProSiteProfiles PAH domain profile. 321 393 IPR003822 GO:0006355
Vifa1g04915 1370 Gene3D Paired amphipathic helix 325 394 IPR036600 GO:0006355
Vifa1g04915 1370 FunFam Paired amphipathic helix SIN3-like protein 128 199 - -
Vifa1g04915 1370 Pfam Paired amphipathic helix repeat 152 196 IPR003822 GO:0006355
Vifa1g04915 1370 Pfam Paired amphipathic helix repeat 66 110 IPR003822 GO:0006355
Vifa1g04915 1370 Pfam Paired amphipathic helix repeat 346 390 IPR003822 GO:0006355
Vifa1g04915 1370 SUPERFAMILY PAH2 domain 43 112 IPR036600 GO:0006355
Vifa1g04915 1370 Pfam Sin3 family co-repressor 482 572 IPR013194 -
Vifa1g04915 1370 SUPERFAMILY PAH2 domain 329 392 IPR036600 GO:0006355
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 411 439 - -
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 889 1038 - -
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 413 439 - -
Vifa1g04915 1370 FunFam Paired amphipathic helix protein SIN3 323 395 - -
Vifa1g04915 1370 Pfam C-terminal domain of Sin3a protein 1085 1330 IPR031693 -
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 890 928 - -
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 231 321 - -
Vifa1g04915 1370 FunFam Paired amphipathic helix protein Sin3 49 111 - -
Vifa1g04915 1370 Gene3D Paired amphipathic helix 49 111 IPR036600 GO:0006355
Vifa1g04915 1370 ProSiteProfiles PAH domain profile. 43 113 IPR003822 GO:0006355
Vifa1g04915 1370 ProSiteProfiles PAH domain profile. 129 199 IPR003822 GO:0006355
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 938 959 - -
Vifa1g04915 1370 Gene3D Paired amphipathic helix 127 199 IPR036600 GO:0006355
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 765 820 - -
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 1 41 - -
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 231 318 - -
Vifa1g04915 1370 PANTHER SIN3B-RELATED 43 1229 IPR039774 GO:0003714
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 970 1000 - -
Vifa1g04915 1370 SMART hdac_interact2seq4b 480 580 IPR013194 -
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 793 820 - -
Vifa1g04915 1370 MobiDBLite consensus disorder prediction 1013 1038 - -
Vifa1g04915 1370 SUPERFAMILY PAH2 domain 127 198 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04915 Vifa-Chr1 767330759 767343382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04915 36 125 WRKY Transcription Factor Family AT4G12020 60.870 4.73e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g04915 Sin3a_C 2.1e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04915 K11644 - gmx:100811928 2004.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04915 1 767330759 767343382 Vifa1g04915 1 767330759 767343382 ECH