Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04899 ATGGTTAATGATAATTCACCAACAATTGACATCGGTGATATTGTTTTAGATGTAGGAAACAAAGAGTCCCCCAAACATCAAAGACTCCTCAGTCCCTTTCTTGCAAAAGAGTTAATAGCAGAGGTTGTTGGAACATATTTCTTGATATTTGCAGGATGTGCTTTAATTATAATGAACCATTGCTTTTGCTTCCACAAGAAGTTTTCCATTGTTACAGGACCGAACTTTTTTGATGTTATGGAACAGAAACATGTCTTTTTGTCTGCATTGAGTGTTGGTGTTGGATTAGGTGTTGTACTTGGATTGAGTTCAGCTGTTCAGAAATGGGTTGGTGGGAATCGTGATTTTGGTGAGGTTTCTGAGGACCAAATTGTTGTTGAACTTAAGAGACTTTTGGTTGATGGAAAAGATAGCAAAGTTACATTTGATGAGTTTCCTTATTACTTAAGCGAAAGAACTCGAGTTTTGTTGACGAGCGCTGCATACGTTCATTTAAAACATCTTAACTTTTCCAAGCATACAAGGAATCTCTCCCCAGCAAGCAGGGCTATCTTACTCTCTGGTCGAGCAGAACTTTATCAGCAAATGCTTGCAAAAGCTTTAGCACATTACTTTGAATCGAAGTTGCTATTGTTAGATGTAACTGATTTCTCCGTGAAGTTGCAGAGCAGATTTGGATATTCAAAAAAAGAACCATGTCACAGAAGATCGATATCTGAGATGACTTTGGAGAGAATGTCTGGTCTATTTGGTTCCTTTTCAACGCTGCCTTCTACCGGCGAAACTAGAGGAACTCTGCGTCAACAAAGCGGTGAAAGTTCGAATAATCTTCCAAGGCTTCGGAGAAATGCCTCTGCCGCGTCTGATCTAAGTAGCTCTTCTTCCCAAAGTGGTTTATTAAATCCAGGTCCTTTACGACGCACAAGTAGCATGTGTTTTGACGAAAGACTCTTTATGCAATCACTTTACAAGGTTTTGGTTTCTATCTCGATAACCGATTCCGTAATTTTGTACATAAGGGATGTTGAGAAGCTTCTTCTAAAATCACCGAGGTTATATAATTTACTACAAGAGATGATAAATAAAATATCAGGCTCGGTGTTGATACTTGGTTCCCAAATATTAGATTTAGAAGATGAAAGCAAAGAAATCGACGAGAGAATCACTAGCTTATTCCCTTACAACATCGATATCAGAGCACCTGAAGACGGAACTCATCTCGGTAGCTGGAAAGCCCAACTTGAAGAGGACATGAAAGTCATTAAGTTTCAAGATACTAGAAACCACATTGCTGAAGTACTCACTGAAAATGACATTGATTGCGACGACTTGAACTCGATATGCCATGCAGATACTATGATACTTAGTAATTATATCGAAGAAATCGTTGTGTCTGCAATTTCTTATCATTTGAGTAATAACAAATATCCAGAATACCGAAATGGAAAACTACTTATCTCGTCCAATAGTTTGTCCCATGGATTGAGTCTCTTCCAAGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGATTCTAATAAGGAAAATGCTGTTGAAGATATTATTTCTGGTACGCAAGCACCTGAGAACAAAAGTGAAACGGAGAAATCGGTCCCTGTAACGAAAAAAGAAGGCGAAAATTCTACGCCTGCAAAAGCTGAAGTACCTGACAACCAGTTCGAGAAGCGAATTAGACCAGAGGTAATCCCTGCAAACGAGATAGGAGTTACATTCGCAGATATCGGCGCATTGGATGAGATAAAAGAGTCACTTCAAGAGCTCGTCATGCTTCCCCTTAGAAGACCGGACCTTTTCAAAGGCGGACTTCTAAAGCCATGCAGAGGTATATTACTTTTCGGGCCACCTGGTACCGGAAAAACAATGCTAGCAAAGGCGATTGCGAATGAAGCAGGAGCAAGTTTCATTAATGTCTCAATGTCCACCATCACTTCGAAATGGTTTGGAGAAGACGAAAAGAACGTCCGAGCTTTATTCACGCTAGCGGCTAAGGTTGCTCCGACTATTATATTCGTCGATGAAGTTGATAGCATGCTCGGTCAACGGACTAGAGTTGGAGAACACGAGGCCATGAGGAAGATTAAAAACGAATTCATGACACATTGGGATGGACTATTGTCAGGACCTAATGAACAAATTCTTGTCCTTGCTGCTACCAACAGACCATTTGATCTCGATGAAGCAATTATAAGACGGTTCGAACGCAGGATCATGGTTGGTCTTCCATCTGTCGAGAACCGAGAAATGATCCTAAAAACTCTTCTGTCGAAGGAAAAACACGAAAACTTAGACTTCAAGGAACTAGCAACCATGACAGATGGGTTTAGTGGAAGTGATCTTAAGAATTTGTGCATCACCGCAGCTTATCGACCTGTTCGGGAGTTAATACAGCAAGAGAGAAAGAAGGAAATGGAAAAGAAGAAAAAAGAGACCGAAAGTGTAAGTTCCGAAGATGCTTCAAATAATAACGATAATGAAGAACGGGAAATTATCTTGAGGCCTTTAAGCATGGAAGACATGAAACAAGCTAAGAATCAGGTGGCTGCAAGTTTTGCGTCAGAAGGATCGGTGATGGGCGAGCTAAAGCAATGGAATGAATTATACGGAGAAGGCGGTTCAAGGAAGAAACAACAACTCACATACTTCCTCTAA 2670 0.4034 MVNDNSPTIDIGDIVLDVGNKESPKHQRLLSPFLAKELIAEVVGTYFLIFAGCALIIMNHCFCFHKKFSIVTGPNFFDVMEQKHVFLSALSVGVGLGVVLGLSSAVQKWVGGNRDFGEVSEDQIVVELKRLLVDGKDSKVTFDEFPYYLSERTRVLLTSAAYVHLKHLNFSKHTRNLSPASRAILLSGRAELYQQMLAKALAHYFESKLLLLDVTDFSVKLQSRFGYSKKEPCHRRSISEMTLERMSGLFGSFSTLPSTGETRGTLRQQSGESSNNLPRLRRNASAASDLSSSSSQSGLLNPGPLRRTSSMCFDERLFMQSLYKVLVSISITDSVILYIRDVEKLLLKSPRLYNLLQEMINKISGSVLILGSQILDLEDESKEIDERITSLFPYNIDIRAPEDGTHLGSWKAQLEEDMKVIKFQDTRNHIAEVLTENDIDCDDLNSICHADTMILSNYIEEIVVSAISYHLSNNKYPEYRNGKLLISSNSLSHGLSLFQEGKSSGNLKTNDSNKENAVEDIISGTQAPENKSETEKSVPVTKKEGENSTPAKAEVPDNQFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSGPNEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLSKEKHENLDFKELATMTDGFSGSDLKNLCITAAYRPVRELIQQERKKEMEKKKKETESVSSEDASNNNDNEEREIILRPLSMEDMKQAKNQVAASFASEGSVMGELKQWNELYGEGGSRKKQQLTYFL 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04899 889 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 575 750 - -
Vifa1g04899 889 ProSitePatterns AAA-protein family signature. 719 738 IPR003960 GO:0005524|GO:0016887
Vifa1g04899 889 MobiDBLite consensus disorder prediction 806 833 - -
Vifa1g04899 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 805 IPR027417 -
Vifa1g04899 889 MobiDBLite consensus disorder prediction 522 559 - -
Vifa1g04899 889 Gene3D - 748 826 - -
Vifa1g04899 889 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 127 888 - -
Vifa1g04899 889 Pfam ATPase family associated with various cellular activities (AAA) 616 746 IPR003959 GO:0005524|GO:0016887
Vifa1g04899 889 MobiDBLite consensus disorder prediction 535 559 - -
Vifa1g04899 889 SMART AAA_5 612 749 IPR003593 GO:0016887
Vifa1g04899 889 Gene3D - 575 747 IPR027417 -
Vifa1g04899 889 MobiDBLite consensus disorder prediction 255 303 - -
Vifa1g04899 889 Pfam AAA+ lid domain 768 811 IPR041569 -
Vifa1g04899 889 Coils Coil 798 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04899 Vifa-Chr1 764154161 764160919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04899 542 805 Calmodulin-binding Proteins AT3G56690 36.630 3.08e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04899 - - gmx:100817952 1281.16