Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g04897 | ATGGAACAGAAACATGTCTTTTTGTCTGCATTGAGTGTTGGTGTTGGATTAGGTGTTGGACTTGGATTGAGTTCAGGACAAGCTGTTCAGAAATGGGTTGGTGGGAATCGTGATTTTGGTGAGGTTTCTGAGGACCAAATTGTTGTTGAACTTAAGAGACTTTTGGTTGATGGAAAAGATAGCAAAGTTACATTTGATGAGTTTCCTTATTACTTAAGCGAAAGAACTCGAGTTTTGTTGACGAGCGCTGCATATGTTCATTTAAAACATCTTAACTTTTCCAAGCATACAAGGAACCTCTCCCCAGCAAGCAGGGCTATCTTACTCTCTGGTCGAGCAGAACTTTATCAGCAAATGCTTGCAAAAGCTTTAGCACATTACTTTGAATCGAAGTTGCTATTGTTAGATGTAACTGATTTCTCCGTGAAGTTGCAGAGCAGATTTGGATATTCAAAAAAAGAACCATGTCACAGAAGATCGATATCTGAGATGACTTTGGAGGGAATGTCTGGTCTATTTGGTTCCTTTTCAACGCTGCCTTCTACCGGCGAAACTAGAGGAACTCTGCGTCAACAAAGCGGTGAAAGTTCGAATAATCTTCCAAGGCTTCGGAGAAATGCCTCTGCCGCGTCTGATCTAAGTAGCTCTTCTTCCCAAAGTGGTTTATTAAATCCAGGTCCTTTACGACGCACAAGTAGCATGTGTTTTGACGAAAGACTCTTTGTGCAATCACTCTACAAGGTTTTGGTTTCTATCTCGGGAACCGATTCCGTAATTTTGTACATAAGGGATGTTGAGAAGCTTCTTCTAAAATCACCGAGGTTATATAATTCACTACAAAAGATGATAAAGAAAATATCAGGCTCGGTGTTGATACTTGGTTCCCAAATATTAGATTTAGAAGATGAAATCAAAGAAATCGACGAGAGAATCACTAACTTATTCCCTTACAACATCGAAATCAAAGCACCTGAAGACGAAACTCATCTCGGTAGCTGGAAAGGCCAACTTGAAGAGGACATGAAAGTCATTAAGTTTCAAGATACTAGAAACCACATTGCTGAAGTACTCACTGAAAATGACATTGATTGCGACGACTTGAACTCGATATGCCATGCAGATACTATGATACTTAGTAATTATATCGAAGAAATCGTTGTGTCTGCAATTTCTTATCATTTGATGAATAACAAATATCCAGAATACCGAAATGGAAAACTAGTTATCTCGTCCAATAGTTTGTCCCATGGATTGAGTCTCTTCCAAGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGATTCTAATAAGGAAAATGCTGTTGAAGATATTATTTCTGGTACGAAAGCACCTGAGAACAAAAGTGAAACGGAGAAATCGGTCCCTGTAACGAAAAAAGAAGGCGAAAATTCTACGCCTGCAAAAGCTGAAGTACCTGACAACGAGTTCGAGAAGCGAATTAGACCAGAGGTAATCCCTGCAAACGAGATAGGAGTTACATTCGCAGATATCGGCGCATTGGATGAGATAAAAGAGTCACTTCAAGAGCTCGTCATGCTTCCCCTTAGAAGACCGGACCTTTTCAAAGGCGGACTTCTAAAGCCATGCAGAGGTATATTACTTTTCGGGCCACCTGGTACCGGAAAAACAATGCTAGCAAAGGCGATTGCGAATGAAGCAGGAGCAAGTTTCATTAATGTCTCAATGTCCACCATCACTTCGAAATGGTTTGGAGAAGACGAAAAGAACGTTCGAGCTTTATTCACGCTAGCGGCTAAGGTTGCTCCGACTATTATATTCGTCGATGAAGTTGATAGCATGCTCGGTCAACGGACTAGAGTTGGAGAACACGAGGCCATGAGGAAGATTAAAAACGAATTCATGACACATTGGGATGGACTATTGTCAGGACCTAATGAACAAATTCTTGTCCTTGCTGCTACCAACAGACCATTTGATCTCGATGAAGCAATTATAAGACGGTTCGAACGCAGGATCATGGTTGGTCTTCCATCTGTCGAGAACCGAGAAATGATCCTAAAAACTCTTCTGTCGAAGGAAAAACACGAAAACTTAGACTTCAAGGAACTAGCAACCATGACAGATGGGTTTAGTGGAAGTGATCTTAAGAATTTGTGCATCACCGCAGCTTATCGACCTGTTCGGGAGTTAATACAGCAAGAGAGAAAGAAGGAAATGGAAAAGAAGAAAAAAGAGACCGAAAGTGTAAGTTCCGAAGATGCTTCAAATAATAACGATAATGAAGAACGGGAAATTATCTTGAGGCCTTTAAGCATGGAAGACATGAAACAAGCTAAGAATCAGGTGGCTGCAAGTTTTGCGTCAGAAGGATCGGTGATGGGCGAGCTAAAGCAATGGAATGAATTATACGGAGAAGGCGGTTCAAGGAAGAAACAACAACTCACATACTTCCTCTAA | 2439 | 0.4088 | MEQKHVFLSALSVGVGLGVGLGLSSGQAVQKWVGGNRDFGEVSEDQIVVELKRLLVDGKDSKVTFDEFPYYLSERTRVLLTSAAYVHLKHLNFSKHTRNLSPASRAILLSGRAELYQQMLAKALAHYFESKLLLLDVTDFSVKLQSRFGYSKKEPCHRRSISEMTLEGMSGLFGSFSTLPSTGETRGTLRQQSGESSNNLPRLRRNASAASDLSSSSSQSGLLNPGPLRRTSSMCFDERLFVQSLYKVLVSISGTDSVILYIRDVEKLLLKSPRLYNSLQKMIKKISGSVLILGSQILDLEDEIKEIDERITNLFPYNIEIKAPEDETHLGSWKGQLEEDMKVIKFQDTRNHIAEVLTENDIDCDDLNSICHADTMILSNYIEEIVVSAISYHLMNNKYPEYRNGKLVISSNSLSHGLSLFQEGKSSGNLKTNDSNKENAVEDIISGTKAPENKSETEKSVPVTKKEGENSTPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSGPNEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLSKEKHENLDFKELATMTDGFSGSDLKNLCITAAYRPVRELIQQERKKEMEKKKKETESVSSEDASNNNDNEEREIILRPLSMEDMKQAKNQVAASFASEGSVMGELKQWNELYGEGGSRKKQQLTYFL | 812 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g04897 | 812 | MobiDBLite | consensus disorder prediction | 445 | 482 | - | - | |
Vifa1g04897 | 812 | FunFam | p-loop nucleoside triphosphate hydrolase superfamily protein | 498 | 673 | - | - | |
Vifa1g04897 | 812 | Pfam | ATPase family associated with various cellular activities (AAA) | 539 | 669 | IPR003959 | GO:0005524|GO:0016887 | |
Vifa1g04897 | 812 | Coils | Coil | 721 | 741 | - | - | |
Vifa1g04897 | 812 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 50 | 811 | - | - | |
Vifa1g04897 | 812 | Gene3D | - | 498 | 670 | IPR027417 | - | |
Vifa1g04897 | 812 | MobiDBLite | consensus disorder prediction | 183 | 226 | - | - | |
Vifa1g04897 | 812 | Pfam | AAA+ lid domain | 691 | 734 | IPR041569 | - | |
Vifa1g04897 | 812 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 498 | 728 | IPR027417 | - | |
Vifa1g04897 | 812 | ProSitePatterns | AAA-protein family signature. | 642 | 661 | IPR003960 | GO:0005524|GO:0016887 | |
Vifa1g04897 | 812 | MobiDBLite | consensus disorder prediction | 729 | 756 | - | - | |
Vifa1g04897 | 812 | SMART | AAA_5 | 535 | 672 | IPR003593 | GO:0016887 | |
Vifa1g04897 | 812 | Gene3D | - | 671 | 749 | - | - | |
Vifa1g04897 | 812 | MobiDBLite | consensus disorder prediction | 452 | 482 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g04897 | Vifa-Chr1 | 764068046 | 764072927 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g04897 | 465 | 728 | Calmodulin-binding Proteins | AT3G56690 | 36.630 | 3.00e-41 | 161 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g04897 | - | - | gmx:100817952 | 1287.32 |