Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04897 ATGGAACAGAAACATGTCTTTTTGTCTGCATTGAGTGTTGGTGTTGGATTAGGTGTTGGACTTGGATTGAGTTCAGGACAAGCTGTTCAGAAATGGGTTGGTGGGAATCGTGATTTTGGTGAGGTTTCTGAGGACCAAATTGTTGTTGAACTTAAGAGACTTTTGGTTGATGGAAAAGATAGCAAAGTTACATTTGATGAGTTTCCTTATTACTTAAGCGAAAGAACTCGAGTTTTGTTGACGAGCGCTGCATATGTTCATTTAAAACATCTTAACTTTTCCAAGCATACAAGGAACCTCTCCCCAGCAAGCAGGGCTATCTTACTCTCTGGTCGAGCAGAACTTTATCAGCAAATGCTTGCAAAAGCTTTAGCACATTACTTTGAATCGAAGTTGCTATTGTTAGATGTAACTGATTTCTCCGTGAAGTTGCAGAGCAGATTTGGATATTCAAAAAAAGAACCATGTCACAGAAGATCGATATCTGAGATGACTTTGGAGGGAATGTCTGGTCTATTTGGTTCCTTTTCAACGCTGCCTTCTACCGGCGAAACTAGAGGAACTCTGCGTCAACAAAGCGGTGAAAGTTCGAATAATCTTCCAAGGCTTCGGAGAAATGCCTCTGCCGCGTCTGATCTAAGTAGCTCTTCTTCCCAAAGTGGTTTATTAAATCCAGGTCCTTTACGACGCACAAGTAGCATGTGTTTTGACGAAAGACTCTTTGTGCAATCACTCTACAAGGTTTTGGTTTCTATCTCGGGAACCGATTCCGTAATTTTGTACATAAGGGATGTTGAGAAGCTTCTTCTAAAATCACCGAGGTTATATAATTCACTACAAAAGATGATAAAGAAAATATCAGGCTCGGTGTTGATACTTGGTTCCCAAATATTAGATTTAGAAGATGAAATCAAAGAAATCGACGAGAGAATCACTAACTTATTCCCTTACAACATCGAAATCAAAGCACCTGAAGACGAAACTCATCTCGGTAGCTGGAAAGGCCAACTTGAAGAGGACATGAAAGTCATTAAGTTTCAAGATACTAGAAACCACATTGCTGAAGTACTCACTGAAAATGACATTGATTGCGACGACTTGAACTCGATATGCCATGCAGATACTATGATACTTAGTAATTATATCGAAGAAATCGTTGTGTCTGCAATTTCTTATCATTTGATGAATAACAAATATCCAGAATACCGAAATGGAAAACTAGTTATCTCGTCCAATAGTTTGTCCCATGGATTGAGTCTCTTCCAAGAAGGCAAGAGTAGTGGGAATCTGAAGACTAATGATTCTAATAAGGAAAATGCTGTTGAAGATATTATTTCTGGTACGAAAGCACCTGAGAACAAAAGTGAAACGGAGAAATCGGTCCCTGTAACGAAAAAAGAAGGCGAAAATTCTACGCCTGCAAAAGCTGAAGTACCTGACAACGAGTTCGAGAAGCGAATTAGACCAGAGGTAATCCCTGCAAACGAGATAGGAGTTACATTCGCAGATATCGGCGCATTGGATGAGATAAAAGAGTCACTTCAAGAGCTCGTCATGCTTCCCCTTAGAAGACCGGACCTTTTCAAAGGCGGACTTCTAAAGCCATGCAGAGGTATATTACTTTTCGGGCCACCTGGTACCGGAAAAACAATGCTAGCAAAGGCGATTGCGAATGAAGCAGGAGCAAGTTTCATTAATGTCTCAATGTCCACCATCACTTCGAAATGGTTTGGAGAAGACGAAAAGAACGTTCGAGCTTTATTCACGCTAGCGGCTAAGGTTGCTCCGACTATTATATTCGTCGATGAAGTTGATAGCATGCTCGGTCAACGGACTAGAGTTGGAGAACACGAGGCCATGAGGAAGATTAAAAACGAATTCATGACACATTGGGATGGACTATTGTCAGGACCTAATGAACAAATTCTTGTCCTTGCTGCTACCAACAGACCATTTGATCTCGATGAAGCAATTATAAGACGGTTCGAACGCAGGATCATGGTTGGTCTTCCATCTGTCGAGAACCGAGAAATGATCCTAAAAACTCTTCTGTCGAAGGAAAAACACGAAAACTTAGACTTCAAGGAACTAGCAACCATGACAGATGGGTTTAGTGGAAGTGATCTTAAGAATTTGTGCATCACCGCAGCTTATCGACCTGTTCGGGAGTTAATACAGCAAGAGAGAAAGAAGGAAATGGAAAAGAAGAAAAAAGAGACCGAAAGTGTAAGTTCCGAAGATGCTTCAAATAATAACGATAATGAAGAACGGGAAATTATCTTGAGGCCTTTAAGCATGGAAGACATGAAACAAGCTAAGAATCAGGTGGCTGCAAGTTTTGCGTCAGAAGGATCGGTGATGGGCGAGCTAAAGCAATGGAATGAATTATACGGAGAAGGCGGTTCAAGGAAGAAACAACAACTCACATACTTCCTCTAA 2439 0.4088 MEQKHVFLSALSVGVGLGVGLGLSSGQAVQKWVGGNRDFGEVSEDQIVVELKRLLVDGKDSKVTFDEFPYYLSERTRVLLTSAAYVHLKHLNFSKHTRNLSPASRAILLSGRAELYQQMLAKALAHYFESKLLLLDVTDFSVKLQSRFGYSKKEPCHRRSISEMTLEGMSGLFGSFSTLPSTGETRGTLRQQSGESSNNLPRLRRNASAASDLSSSSSQSGLLNPGPLRRTSSMCFDERLFVQSLYKVLVSISGTDSVILYIRDVEKLLLKSPRLYNSLQKMIKKISGSVLILGSQILDLEDEIKEIDERITNLFPYNIEIKAPEDETHLGSWKGQLEEDMKVIKFQDTRNHIAEVLTENDIDCDDLNSICHADTMILSNYIEEIVVSAISYHLMNNKYPEYRNGKLVISSNSLSHGLSLFQEGKSSGNLKTNDSNKENAVEDIISGTKAPENKSETEKSVPVTKKEGENSTPAKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSGPNEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMILKTLLSKEKHENLDFKELATMTDGFSGSDLKNLCITAAYRPVRELIQQERKKEMEKKKKETESVSSEDASNNNDNEEREIILRPLSMEDMKQAKNQVAASFASEGSVMGELKQWNELYGEGGSRKKQQLTYFL 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04897 812 MobiDBLite consensus disorder prediction 445 482 - -
Vifa1g04897 812 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 498 673 - -
Vifa1g04897 812 Pfam ATPase family associated with various cellular activities (AAA) 539 669 IPR003959 GO:0005524|GO:0016887
Vifa1g04897 812 Coils Coil 721 741 - -
Vifa1g04897 812 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 50 811 - -
Vifa1g04897 812 Gene3D - 498 670 IPR027417 -
Vifa1g04897 812 MobiDBLite consensus disorder prediction 183 226 - -
Vifa1g04897 812 Pfam AAA+ lid domain 691 734 IPR041569 -
Vifa1g04897 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 728 IPR027417 -
Vifa1g04897 812 ProSitePatterns AAA-protein family signature. 642 661 IPR003960 GO:0005524|GO:0016887
Vifa1g04897 812 MobiDBLite consensus disorder prediction 729 756 - -
Vifa1g04897 812 SMART AAA_5 535 672 IPR003593 GO:0016887
Vifa1g04897 812 Gene3D - 671 749 - -
Vifa1g04897 812 MobiDBLite consensus disorder prediction 452 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04897 Vifa-Chr1 764068046 764072927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04897 465 728 Calmodulin-binding Proteins AT3G56690 36.630 3.00e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04897 - - gmx:100817952 1287.32