Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04893 ATGGTTTTAAACATGATGTTTCATCTTCTAAGCCATGTTCTTATTTTACAAATTTTTCTAATACAAACTCACTATTGCCAACCCAATTCACCTCAAAATCAAAACATTGAAACTTTTTATCCAATTCAAATTCCACAACAATTCACACCACCATCATCACAAGCACCAACATCATCACCACAAGCACCAACATCTTCAACAACAAATTCTTCATCAAACAATAAGATAGTAACTGCCGTAGCTGCGACTGCAGCAGGAACTTTAGTTCTTTCTGCTCTAGTTTTCTTCTTTGTTCTCAAATGCTTTAGAGCAAAGAAAAAAAATGTGAGGGTGAAGAACAATAACAACAACAATGATTCTTCTTTAGTTCATAGAAATGTTGTGCCCCATTTGAATGTGTTTGAGAAAATGGAAGGTAACATAAAAGGACTTATTGTTGATGAAGATGGTTTAGATGTTGTTTATTGGAGAAAACTTCAAGATCAAAACTTTGATAAGGATATGAAAAAGGGTGTGTTTTTGAATAGCCCTAGAAAAAGAGATTATGATGAAGGTGATCAAGGGAAGAATAATCAAGAAATTCATTTGCTTAGAGGAAAATCTTCAACCTCACATATGAATATTTTTCCACAAGAATCATCATATACAATTATGAAGATTACACCTCCTGCTCCTCCTCCTCCTATTGATGTTTCTACTCAACCATTTTCTCTAAACCTTCTTCCTTCGTCGCCAAGAAAGCTCTCTACTTTGTTCTCATCAATTCCGAATGTGACTAATCATGCACCATCAATGGTTTCTGATGATATAAAGAGTCAAGAACCACCTCCTCCACCGCCACCTCCTCCTTCGTCAATAGTACCTGATAGAAAAAGCTCAGCGCCACCGCCACCGCCTCCTCCTCCTCCACTGATTCTAGATAGAAAGAGTCTTGCAACACCGCCTCCGCCTCCTCCTCCTCCGCTGTCAACTAGAAAGATTTCTACTCCAACGCCACCGCCACCACCGAAGACAAGTGGATTGAAGTTGAAGTCATCATCAAAACCACCACCTACCCCTCTTGAAACAAAATCTACCAACAATAAACAAGGGAGTTCTTCAAGTGAAGTGAAACTAAAACCATTGCATTGGGATAAGGTGAATACTAATCTTGATCACTCTATGGTGTGGGACAAAATCGACGGCGGTTCATTCAGGGTTGATGATGGTCTTATGGAAGCTCTATTCGGGTATGTTGCGGCCAAACCAAACGGTAACACTTCAAAAGGAAAAGAATCAACAAGTCCAAGCAAGGATACATCAACAAATGCTTTCATTCTTGACCCTAGAAAATCACAAAACACTGCTATAGTTTTGAAATCTCTTGCAGTCTCGCGAAAAGAAATCATTGATGCACTCGTCGATGGCCGAGGCCTTAATGCAGATACAATTGAAAAGCTTTCAAGAATCGCTCCAACAGAAGAAGAACAATCTCACATACTCGAATACGAAGGAGACACAACAAAACTTGCAGCAGCTGAATCTTTCTTGTACCACATCCTCAAAGCTGTTCCTTCGGCATTTAAGCGCTTGAATGCGATTTTATTCAGGTTGAATTATGACTCGGAGATCAAAGAAATCAAGGAGATTCTACAGACACTTGAGATGGCGTGTAAGGAGCTTCGAAACCAAGGAGTTTTTGTGAAACTCCTTGAAGCAGTTCTTAAGGCCGGAAACCGCATGAATGCTGGTACTAATCGAGGTAATGCTCAAGCTTTCAACTTGGTTTCTTTAAGGAAACTCTCTGATGTGAAGAGTGTTGATGGAAAAACCACATTATTACACTTTGTGGTCGAAGAAGTGGTTCGTTCCGAAGGGAAACGCGCGGTTCTTAACCGCAGTCATAGTTTGACTCGTAGTTTCAGCAGGAGCAGCAGCAGCATTGGGGACTCTAAGAATTCCGCTACCTCGAATGAACAAAAACTAATGGAATATATAAAACTAGGATTACCAATTGTAGGAGGGGTCAGTGCCGAGTTTTCCAATGCAAAGAAAATTGCTTTAACAGATTACAATAGTTTTGTTGGTTCTATTTCAACACTCTCTGCGAAGATAGTTGAAATTCGACAACTTGTTTCGCAGTGTGGAAATGATAAAGGAGGGAAGTTTGTGAGAGAGATGAACCATTTTCTTGAAAATTCTGAGAAGGATTTGCAATTGGTGAGGGAAGAACAAACAAGGATAATGCAGCTTGTTAAGAGAACAACAGATTATTATCAAGGGGGGGCTTCAAAAGACAGTGCAGGAGAACAGGCTCTTTATCTATTTGTCATAGTTAAGGATTTTCTCGGAATGGTTGATCAAGCGTGTATCGAGATTGCGCGTAACATGCAGAAAAAGAAGACATCTAAGGCAAAGTTCTAA 2403 0.397 MVLNMMFHLLSHVLILQIFLIQTHYCQPNSPQNQNIETFYPIQIPQQFTPPSSQAPTSSPQAPTSSTTNSSSNNKIVTAVAATAAGTLVLSALVFFFVLKCFRAKKKNVRVKNNNNNNDSSLVHRNVVPHLNVFEKMEGNIKGLIVDEDGLDVVYWRKLQDQNFDKDMKKGVFLNSPRKRDYDEGDQGKNNQEIHLLRGKSSTSHMNIFPQESSYTIMKITPPAPPPPIDVSTQPFSLNLLPSSPRKLSTLFSSIPNVTNHAPSMVSDDIKSQEPPPPPPPPPSSIVPDRKSSAPPPPPPPPPLILDRKSLATPPPPPPPPLSTRKISTPTPPPPPKTSGLKLKSSSKPPPTPLETKSTNNKQGSSSSEVKLKPLHWDKVNTNLDHSMVWDKIDGGSFRVDDGLMEALFGYVAAKPNGNTSKGKESTSPSKDTSTNAFILDPRKSQNTAIVLKSLAVSRKEIIDALVDGRGLNADTIEKLSRIAPTEEEQSHILEYEGDTTKLAAAESFLYHILKAVPSAFKRLNAILFRLNYDSEIKEIKEILQTLEMACKELRNQGVFVKLLEAVLKAGNRMNAGTNRGNAQAFNLVSLRKLSDVKSVDGKTTLLHFVVEEVVRSEGKRAVLNRSHSLTRSFSRSSSSIGDSKNSATSNEQKLMEYIKLGLPIVGGVSAEFSNAKKIALTDYNSFVGSISTLSAKIVEIRQLVSQCGNDKGGKFVREMNHFLENSEKDLQLVREEQTRIMQLVKRTTDYYQGGASKDSAGEQALYLFVIVKDFLGMVDQACIEIARNMQKKKTSKAKF 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04893 800 SMART it6_source 362 794 IPR015425 -
Vifa1g04893 800 MobiDBLite consensus disorder prediction 414 437 - -
Vifa1g04893 800 Pfam Formin Homology 2 Domain 367 779 IPR015425 -
Vifa1g04893 800 MobiDBLite consensus disorder prediction 272 339 - -
Vifa1g04893 800 Gene3D Formin, FH2 domain 382 799 IPR042201 -
Vifa1g04893 800 MobiDBLite consensus disorder prediction 419 437 - -
Vifa1g04893 800 MobiDBLite consensus disorder prediction 49 72 - -
Vifa1g04893 800 Coils Coil 537 557 - -
Vifa1g04893 800 PANTHER FORMIN-RELATED 33 790 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vifa1g04893 800 ProSiteProfiles Formin homology-2 (FH2) domain profile. 362 800 IPR015425 -
Vifa1g04893 800 SUPERFAMILY Formin homology 2 domain (FH2 domain) 375 796 - -
Vifa1g04893 800 MobiDBLite consensus disorder prediction 340 370 - -
Vifa1g04893 800 MobiDBLite consensus disorder prediction 260 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04893 Vifa-Chr1 763149908 763152482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04893 345 795 FH2 protein (formin) Gene Family AT1G70140 58.186 1.95e-178 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04893 - - gmx:100778804 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04893 1 763149908 763152482 Vifa1g04893 1 763149908 763152482 ECH