Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04891 ATGGAGACAAACGGTGTCGTTTCGATTGATGTCGATGCTGAAGAGGTTCATGTTCTGGCCGTTGATGATAGTTTAGTTGATCGGAAAGTCATTGAACGGTTGCTCAAAATTTCAGCTTGTAAAGTTACTGCTGTGGATAGTGGAATCAGAGCACTGCAATTTCTGGGATTGGATGAATCTGATGGTTTTGTCCCGGGTTTGAAGGTGGATCTAGTCATTACAGATTATTGCATGCCTGGAATGACTGGTTATGAGTTGCTTAAGAAAATCAAGCAGGAATCGTCCAGTTTCAGAGAAATTCCTGTAGTTATTATGTCTTCAGAAAACATTTTGCCACGCATAGACAGATGTTTGGAGGAAGGTGCAGAGGACTTTATAGTAAAACCAGTGAAACTATCTGATGTGAAACGTTTGAAGGGTTACATGACAACAAGAGATGTTAGAGGGGAAACTGAAAACAGAGAAATTAACGTTAACTTTAACGGTAACGTTGAAGGTAACAATGGAGTGGGAATCAACAACAAAAGGAAACTAGAGGAAGCTTCTGATGAGTTTTCATCAGAACCGTCCATTTCATCATCACCGTCGGTGTCACTTTCATCATCTCCGATGTCTTCTTCACCTGATGTGCTTGATTCTCCGATCCGACGGCTTAAAATGGCCGACACTGAATGA 675 0.4133 METNGVVSIDVDAEEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDESDGFVPGLKVDLVITDYCMPGMTGYELLKKIKQESSSFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTRDVRGETENREINVNFNGNVEGNNGVGINNKRKLEEASDEFSSEPSISSSPSVSLSSSPMSSSPDVLDSPIRRLKMADTE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04891 224 Gene3D - 16 190 - -
Vifa1g04891 224 SUPERFAMILY CheY-like 16 137 IPR011006 -
Vifa1g04891 224 CDD REC_typeA_ARR 18 138 - -
Vifa1g04891 224 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 190 IPR045279 GO:0009736
Vifa1g04891 224 MobiDBLite consensus disorder prediction 179 224 - -
Vifa1g04891 224 MobiDBLite consensus disorder prediction 185 209 - -
Vifa1g04891 224 ProSiteProfiles Response regulatory domain profile. 17 143 IPR001789 GO:0000160
Vifa1g04891 224 SMART REC_2 16 142 IPR001789 GO:0000160
Vifa1g04891 224 Pfam Response regulator receiver domain 18 135 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04891 Vifa-Chr1 762737611 762739205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04891 11 216 Response Regulator Gene Family AT1G59940 56.306 4.51e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g04891 Response_reg 7.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04891 K14492 - gmx:100779833 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04891 1 762737611 762739205 Vifa1g04891 1 762737611 762739205 ECH