Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04890 ATGGAGACAAACGGTGTCGTTTCGATTGATGTCGATGCTGAAGAGGTTCATGTTCTGGCCGTTGATGATAGTTTAGTTGATCGGAAAGTCATTGAACGGTTGCTCAAAATTTCAGCTTGTAAAGTTACTGCTGTGGATAGTGGAATCAGAGCACTGCAATTTCTGGGATTGGATGAATCTGATGGTTTTGTCCCGGGTTTGAAGGTGGATCTAGTCATTACAGATTATTGCATGCCTGGAATGACTGGTTATGAGTTGCTTAAGAAAATCAAGGAATCGTCCAGTTTCAGAGAAATTCCTGTAGTTATTATGTCTTCAGAAAACATTTTGCCACGCATAGACAGATGTTTGGAGGAAGGTGCAGAGGACTTTATAGTAAAACCAGTGAAACTATCTGATGTGAAACGTTTGAAGGGTTACATGACAACAAGAGATGTTAGAGGGGAAACTGAAAACAGAGAAATTAACGTTAACTTTAACGGTAACGTTGAAGGTAACAATGGAGTGGGAATCAACAACAAAAGGAAACTAGAGGAAGCTTCTGATGAGTTTTCATCAGAACCGTCCATTTCATCATCACCGTCGGTGTCACTTTCATCATCTCCGATGTCTTCTTCACCTGATGTGCTTGATTCTCCGATCCGACGGCTTAAAATGGCCGACACTGAATGA 672 0.4122 METNGVVSIDVDAEEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDESDGFVPGLKVDLVITDYCMPGMTGYELLKKIKESSSFREIPVVIMSSENILPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTRDVRGETENREINVNFNGNVEGNNGVGINNKRKLEEASDEFSSEPSISSSPSVSLSSSPMSSSPDVLDSPIRRLKMADTE 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04890 223 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 189 IPR045279 GO:0009736
Vifa1g04890 223 Gene3D - 16 189 - -
Vifa1g04890 223 SUPERFAMILY CheY-like 16 136 IPR011006 -
Vifa1g04890 223 ProSiteProfiles Response regulatory domain profile. 17 142 IPR001789 GO:0000160
Vifa1g04890 223 SMART REC_2 16 141 IPR001789 GO:0000160
Vifa1g04890 223 CDD REC_typeA_ARR 18 137 - -
Vifa1g04890 223 Pfam Response regulator receiver domain 18 134 IPR001789 GO:0000160
Vifa1g04890 223 MobiDBLite consensus disorder prediction 178 223 - -
Vifa1g04890 223 MobiDBLite consensus disorder prediction 184 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04890 Vifa-Chr1 762737611 762739205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04890 11 215 Response Regulator Gene Family AT1G59940 56.561 8.58e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g04890 Response_reg 9.7e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04890 K14492 - gmx:100779833 269.24