Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04877 ATGGCAGGAAATGGTAAGAAAGTTGCAATAGGTATTGACCTAGGAACAACCTATTCATGTGTTGCTGTGTGGAGACATGATGAGATAGAGATCATAGTGAATGATCAAGGGAATAGAACAACTCCCTCTTATGTTGCATTTAATGACTCTCAAAGGATGATTGGTGATCCAGCTTTCAACATGGTTACTTGTAATCCAACCAACATTGTCTTTGATGCAAAGAGGCTAATTGGGAGGAAATTTTCCGACACCATAGTTCAGAGTGATATGACTCTATGGCCATTTAAAGTAATTGGCGACGTCAATGACAAACCTATGATTGTTGTGAATTACAATGACGAGGAAAAACATTTTGCAGCTGAAGAAATATCATCCATGGTATTGGCGAAAATGCGAGAGATTGCAGAAGCTTACCTTGGATCTATAGTGAAGGATGTTGTTATAACTGTTCCAGCTTACTTCAATAACTCACAACGCCAGTCTACTAGAGATGCAGGTGTTATTGCAGGCCTCAATGTTATGCGAATAATCAATGAACCTACTGCAGCAGCAATTGCATATGGCCTTCACATGAAACCGTTTAATCATGGAAGAAGAAATGTATTCATTTTTGACTTAGGTGGTGGCACATTGGATGTGTCCGTCCTCACATTTGAAAATGGTGATATTCAAGTTAAGGCCATCGCAGGCGACACTCACCTCGGGGGACAAGACTTTGATAACACAGTAGTGGATCATTTTGTGAAGGAGTTTTTGAGGAAGCATGAGATTGACATTAGTGGAGACCGAAGATCGGTTAGGAAGTTGAAGAACGCTTGCGAGAAAGCAAAGAGGATACTTTCGTCCACTCCCGGGACCACCATTGAGATAGATAGTTTAAATCAAGGTATAGATTTCTTCTCAACGATTAGTCGTGCGAAGTTCGATGAACTCAACAAGAATCTTTTCAAAAAGTGCATGGAGATTGTTGAAAAATGTTTAATAGATAGTGGGATGAACAAGAGTAGCATTCATGATGTTGTCCTTGTTGGTGGCTCTACAAGGATCATAAAAGTGCAAGAATTGTTAATAGATTTCTTTGAAGGGAAGCAATTATGCAAAAGCATCAATGCAGATGAAGCTGTTGCACATGGTGCTGCTGTTCATGCTTCTATATTGAGTGGTGAGTTTAGTGAAAAGGTTGAAGATTTGGTATTGAGGGAGGTTATTCCTTTGTCCCTTGGATTGCAGACTCATGGTGGAATCATGGAGATTATAATTCCTAGGAATACTATAATCCCTACAAACATGCAACATGTGTTCACCACACATGTTCACAACCAAGTCAATATTTTAATCCATGTTTTTGAGGGTGAGAGGCTAAGAAGTGAGGAGAATAACTTGCTAGGAAAGTTTGTGTTGGAAATTCCTCCAGCTCCTGTAGGTGTTCCTCAAATCAAGATCAGCTTTCAAATTGATGATGATGGCATCTTACATGTGGCTAGCACGGAAAAATCTCTTGGAGTTAATAAGAAGGTTAAAATTACGAGTGACAAGGGAAGGCTTACAAAGGAAGAAATTGAGAGGATGATCAAAGATGCTGAGAAGTACAAAGATGAAGACAAGAGGTATAGGAAAAAGGTAGAAGCAAGAAGGGCATTGGAGAAGTATGCAATCAAGATGCGAAATGCTATTGAAGATGAGGAGATTAACATGAAGCTGTCTTCAGAAGACAAGAGAATGATCAATGAGGCAATTGATTTGGTTCTAATGTGGCTTGATGTGAATGAGATTGCGGAACAGCATGATTTTGAGTATTATGGAAGCATTCTTTCAAGTGTTTTTGATCCAACCATTGTGAAGATGATAAGGAATGAGGGAAATAGTGTCAAACCAGGTACTGTTATTGGATATCCTCTTGATAATAGAAAGAATCGTTGGATATTACTACTAGCAAAATATAGTTTTCAGATAGTATATTCAGCTGCAACAGGTAACATAACAGGGTTAGTTTCTTCTATAGTTGTGGACTTATTCACAAATACTTGA 2028 0.3876 MAGNGKKVAIGIDLGTTYSCVAVWRHDEIEIIVNDQGNRTTPSYVAFNDSQRMIGDPAFNMVTCNPTNIVFDAKRLIGRKFSDTIVQSDMTLWPFKVIGDVNDKPMIVVNYNDEEKHFAAEEISSMVLAKMREIAEAYLGSIVKDVVITVPAYFNNSQRQSTRDAGVIAGLNVMRIINEPTAAAIAYGLHMKPFNHGRRNVFIFDLGGGTLDVSVLTFENGDIQVKAIAGDTHLGGQDFDNTVVDHFVKEFLRKHEIDISGDRRSVRKLKNACEKAKRILSSTPGTTIEIDSLNQGIDFFSTISRAKFDELNKNLFKKCMEIVEKCLIDSGMNKSSIHDVVLVGGSTRIIKVQELLIDFFEGKQLCKSINADEAVAHGAAVHASILSGEFSEKVEDLVLREVIPLSLGLQTHGGIMEIIIPRNTIIPTNMQHVFTTHVHNQVNILIHVFEGERLRSEENNLLGKFVLEIPPAPVGVPQIKISFQIDDDGILHVASTEKSLGVNKKVKITSDKGRLTKEEIERMIKDAEKYKDEDKRYRKKVEARRALEKYAIKMRNAIEDEEINMKLSSEDKRMINEAIDLVLMWLDVNEIAEQHDFEYYGSILSSVFDPTIVKMIRNEGNSVKPGTVIGYPLDNRKNRWILLLAKYSFQIVYSAATGNITGLVSSIVVDLFTNT 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04877 675 SUPERFAMILY Actin-like ATPase domain 7 191 IPR043129 -
Vifa1g04877 675 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vifa1g04877 675 Gene3D - 10 383 - -
Vifa1g04877 675 FunFam Heat shock protein 70 10 198 - -
Vifa1g04877 675 Gene3D Actin; Chain A, domain 4 235 318 - -
Vifa1g04877 675 Pfam Hsp70 protein 9 582 IPR013126 GO:0005524|GO:0140662
Vifa1g04877 675 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Vifa1g04877 675 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 543 IPR029047 -
Vifa1g04877 675 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 542 620 IPR029048 -
Vifa1g04877 675 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 548 IPR029047 -
Vifa1g04877 675 Gene3D - 544 617 IPR029048 -
Vifa1g04877 675 FunFam Heat shock 70 kDa protein 389 544 - -
Vifa1g04877 675 FunFam heat shock 70 kDa protein-like 71 126 - -
Vifa1g04877 675 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa1g04877 675 PRINTS 70kDa heat shock protein signature 36 48 - -
Vifa1g04877 675 PRINTS 70kDa heat shock protein signature 337 353 - -
Vifa1g04877 675 PRINTS 70kDa heat shock protein signature 209 219 - -
Vifa1g04877 675 PRINTS 70kDa heat shock protein signature 369 389 - -
Vifa1g04877 675 PRINTS 70kDa heat shock protein signature 58 66 - -
Vifa1g04877 675 PRINTS 70kDa heat shock protein signature 476 492 - -
Vifa1g04877 675 PRINTS 70kDa heat shock protein signature 146 166 - -
Vifa1g04877 675 PRINTS 70kDa heat shock protein signature 396 415 - -
Vifa1g04877 675 Gene3D - 71 126 - -
Vifa1g04877 675 PANTHER HEAT SHOCK PROTEIN 70KDA 9 570 IPR013126 GO:0005524|GO:0140662
Vifa1g04877 675 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Vifa1g04877 675 FunFam Heat shock 70 kDa 235 318 - -
Vifa1g04877 675 Gene3D - 192 366 - -
Vifa1g04877 675 Coils Coil 520 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04877 Vifa-Chr1 761365483 761375255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04877 1 620 Calmodulin-binding Proteins AT3G12580 64.734 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04877 K03283 - gmx:100798636 872.848