Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04854 ATGAATGGGCAAAATGTTGTTACAATGAAGATTTTGGTTGTTTTGACACTTTGGATGTTGCTCGGGCCAAGGAAAACATCAAAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCATAAAGGTTGGTATGAAGAAGAGAGGAGGCAAGCAGATGTGAACTCACTGATGCTGATACTGGCATTGCTATGTCTTTTGCTTCCAATGCTATTTACATACAGTGCTGCATCACCGGAACTCACCGTAGAATCTTCACTTTACTTGTCAAGAGCTGCTAGCATTGTCATGTTGGCTGCATATTTTGTTTACTTGATCTTTCAACTATGGACACATAGGCAACTATTTGAAGCTGAAGATGAAGGCGGAGATGAGAACATTGAGGCAGAAGAGGCTGTGATTGGATTTTGGAGTGGATTTGCTTGGTTGGCTGGAATGACCGTGTTCACTGCGTTGTTGTCTGAATACGTGGTCGATACAATTGAGGATGCATCAGATTCATGGGGTTTATCAGTGAGCTTCCTCAGCATAATCTTGCTTCCAGTAGTTGGCAATGCAGCTGAACATGCTGGAGCAATCATTTTTGCTTTCAAGAACAAGCTTGTAAGAATTTATATTATAGTGTTACTCAATTCCATACTTAATCCTTTCATTTAA 657 0.4003 MNGQNVVTMKILVVLTLWMLLGPRKTSKRFHLFKVENFFWHKGWYEEERRQADVNSLMLILALLCLLLPMLFTYSAASPELTVESSLYLSRAASIVMLAAYFVYLIFQLWTHRQLFEAEDEGGDENIEAEEAVIGFWSGFAWLAGMTVFTALLSEYVVDTIEDASDSWGLSVSFLSIILLPVVGNAAEHAGAIIFAFKNKLVRIYIIVLLNSILNPFI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04854 218 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 48 210 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vifa1g04854 218 Pfam Sodium/calcium exchanger protein 139 204 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04854 Vifa-Chr1 758348182 758349922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04854 48 201 Antiporters AT2G38170 62.893 1.46e-56 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04854 K07300 - psat:127087560 250.366