Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04837 ATGGAGGATCTTTGGAGCATGATTTGTGAGGACTGTGGTTTTTCTGAGAATGGAGGAAAGCCTTTCTGTTATGATCTAAATCTTTTGAAAGATCCTTCCTCGTGTATCAGCCATGTGTTGGTAATTTGCTTTGATGTGTTCCTGCTAATCGTGTTATCATTCATCATGATCCTGAAGTCTTCCTCGAGACGCTTTAGGAGTCTAGTAAGATATTCAAACTTGCAGTTAGTTTCTGCCATAACCAATGGCTTTCTTGGGTTTTTGCATTTATCCTTAGGAACTTGGGTTTTAGAAGAGAAGTTAAGGAAAACACACACAGTCTTTCCTCTTGACGCGTGGTCGCTAGACCTCGTTCATGGATTCGTATGGTTGTCAGTAAGTTTAACTGTAAGCCTTCAGGTAAAACAACACTCAAGAGCATGGTCATGGATGTTTTCTGTTCTCTTATTCTTTGTTTCTGGTATACTATGTGCTTTATCCATGTCTTGTGCAATTGGCAGCAGAAAATTGTCCCTCGAGGCAGCTATAGATGTTCTATCTTTTCCAGGAGCAACTTTACTGATGTTATGCACATACAAAGCATGTACATGTGAAGATGCTGACAAAGAAATTGGTGAAAGACTTTATACTCCTTTAAATAGTCAGTTCAATGAATTTGATACTGTTGGCAATGTAACCCCATTTTCCAAAGCTGGATTCTTTAGTAAGAGTTTGTTTTGGTGGTTGAATCCATTTATGAAAAGCGGTCAAGAGAAGACACTTCTTGATGAGGATATCCCGGAGTTAAGAGAGACTGACCGAGCAGAAAGTTGTTATCTATCATTTGTAGAACAGTTAAACAAACAAAGTCAACACGAATCATCATCACATTCTTCGGTTTTATGGACAATAACTATGTGCCACCGAAGAGAGATTTTGATAACAGGATTCTTTGCTTTGCTCAAGGTACTCACTCTATCTTCTGGTCCTCTACTTCTGAATGAATTTATATCGGTTGCTGAAGGTAAGAAAAATTTCAAATACGAAGGTTGTGTATTGGCTATATCACTCTTCTTTATAAAGATCATAGAATCCCTATCACAAAGACAATGGTATTTCCGCAGTAGACTTGTTGGAATGAAAGTTAGGTCACTACTTACTGCGGCAATTTATAAAAAAATCCTAAGGCTATCCAATTCTGCTAGACTGGTTCACTCTAGTGGTGAGATAATGAATTATATGACGGTAGACGTTTATAGAATTGGAGAATTTCCATTTTGGTTTCACAAGACTTGGACAACAATTCTTCAACTGAGTATTGCATTAGTAATTCTTTTCCAAGCAATTGGACTAGCAACGATAGCCTCATTGGCGGTGATAGTTCTCACTGTGATTTGCAACACTCCATTAGCGAAGTTACAACACAAGTTTCAAAGCAAACTCATGGTAGCACAAGATGAGAGATTAAAGGCTAGTTCAGAGGCTCTTGTGAATATGAAAGTGCTTAAGCTATATGCATGGGAAATACATTTTAAAAATGTTGTAGATTACTTAAGAAATGTGGAACTCAAATTGTTATCTGATGTGCAAATCAGAAGAACATACCATATGTTTTTCTTTTGGACCTCGCCGATATTGGTGTCTGGTGCTTCTTTTCTGGCATGTTACTTCTTGAATGTTCCTTTGAATGCAAGTAACGTTTTCACTTTTGTGGCAACTTTGCGTCTTGTTCAAGATCCGATTTCAAACATCTCGGATGTTATTGCAGTGATCATTCAGGCAAAAGTTGCATTTGCTCGGATCGTTAATTTCCTTGATGCACCAGAACTGCAGAGTGAAAAATGCAGGAAAATGTGCTTTAATGACAACCTCAAAGACCGAATTTCAATCAAATGTGCAGACTTTTCATGGGAAGCTAGTGAATCAAAGCCAACACTAACGAACATAAACTTGGACGTTAGACATGGACAAAATGTGGCAATTTGTGGAGAAGTTGGCTCAGGAAAATCAACCCTCTTAGCAACAATTCTTGGTGAAGTTTCTAAAACAAAGGGAACTATTGATGTTCATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATACAAACAGGCACAGTACGGGAAAATATTTTATTTGGATCGGAGTTGGATGATCAAAGATATCAAGAAACACTTCAGAGATCTTCCCTAGTAAAGGACCTTGAGTTGTTTCCCTATGGGGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGACAAAAGCAACGAATTCAACTTGCTCGCGCACTTTATCAGAATGCTGATATATATCTATTGGATGATCCGTTTAGTGCTGTTGATGCACATACTGCAAAAAAATTGTTTAATGACTACATCATGGGAGGACTCAAAGGGAAAACAGTCTTACTCGTGACTCATCAAGTCGATTTTCTCCCAGCATTTGATTCTATTTTGTTGATGTCTTGTGGGGAAATCCTACACGCTGGTCCATATCACCAGCTATTGACCTCAAGTCAAGAATTTAATGATCTTGTCAATGCACACAAAGAGACCGCTAGTTCTGACCAATTTGTGAGTGCTACTTTTTCCCAGAAACATCCAACTTCCATAAATAGTATGCAAGCTTCGGTATTAAAGCAGTATAAAGAACCAAATGGAAATCAGTTAATTCAGCAAGAAGAGAGAGAGAAAGGAGACACGGGATTGAAACCATACTTCCAATATCTGAATCGGATGAAAGGCTATATATTATTCTTTGTGGCTTCCCTTTGTCACCTAATATTTGTGGTTTGTCAGATATTGCAAAACTCATGGATGGCTGCTAATGTTGACAATCCCCTTGTCAGCACATTGCAACTGATTTTAGTTTATTTCCTAATTGGTGCTTTATCATCGGTTTTTCTGTTCATCCGATGTCTACTTGTAGTTACTTTAGGTCTTCAATCATCAAAAGATTTATTTTCACAATTGATGAACTCCCTCTTCCACGCACCCATGTCATTTTATGACTCTACACCATTGGGAAGGGTACTTAGTAGGGTTTCATCTGATCTGAGTATTGTGGATCTTGACATTCCATTTAGCCTCACTTTTGCTGTGGCGGGCACTATAGCTCTTTATTCTAATCTTACAGTTTTGGCGATTGTCACATGGCCAGTCTTGATAGTGGCTATACCAATGGTTTATGTTGCTATTCATAGGCAGAGATACTACTTTGCCTCAGCAAAAGAAGTAATGCGGTTGAATGGCACAACAAAATCCTCTTTAGCAAATCATGTAGCCGAAACTGTGGCTGGAGCTGTAACAATAAGGGCTTTTGAGGAGGAACATCGTTCTTTTGAGAAGAATCTTGATCTAATTGATAATAACGCTAGTGCTTTTTTTCATAGCTTTGCCTCAAACGAGTGGTTGATCCAACGGTTAGAAACAACCAGTGCAGTTGTTCTCGCCGCTGCAACTATTTGCCTGGTTATGCTGCCCCCTGGAACTTTCCCCTCAGGAATTATTGGCATGGCTCTATCTTATGGCCTATCATTAAACGGTGCTTTAGTATTTGCAATTCAAAATCAATGCACTCTTGCAAATCACATAATATCAGTAGAGAGGCTAAATCAATATATGCATATACAAAGTGAGGCCAAAGAAATAGTAGAAGGAAATCGTCCCCCTTTGAATTGGCCAATTGCAGGCAAAGTAGAAATAAATGACTTGAAGATACGATACAGACATGGTGGACCACTTGTTCTTCATGGGATCACATGCACATTTAAGGCAGGTCACAAGATTGGTATTGTTGGCAGAACAGGCAGTGGGAAGTCCACTCTTATTGGGGCTTTATTTCGTCTTGTAGAACCAGCCGAAGGAAAAGTTGTAGTTGATGGAATAGACATCTCATCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGGATTATACCTCAGGATCCTACTCTTTTTAATGGGACAGTGAGATTTAACTTGGACCCTTTATCCCAACACACTGATCAAGAGATATGGGAGGTTCTTAGGAAGTGTCAGTTGCGAGAAGTAGTCCAGGGCAAAGAAGAGGGCTTAAACTCTTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAACGACAGTTATTTTGTTTGGGGCGTGCCCTTTTGAGGAGAAGTAGGATATTAGTATTGGACGAAGCGACTGCATCAATTGATAATTCTACTGACCTGATTGTGCAGAAAACCATAAGGGCAGAGTTTGCAGATTGTACGGTGATCACAGTAGCACATAGGATACCAACTGTGATGGATTGCACTATGGTTCTTGCTATAAGTGATGGGAAATTGGCGGAGTATGATGAGCCAATGAGCTTGATGAAGAGAGAAGAATCGATGTTCAGGCAACTTGTCAAGGAATACTGGTCTCATTTTCATTCTGCAGAGTCACATTGA 4428 0.3932 MEDLWSMICEDCGFSENGGKPFCYDLNLLKDPSSCISHVLVICFDVFLLIVLSFIMILKSSSRRFRSLVRYSNLQLVSAITNGFLGFLHLSLGTWVLEEKLRKTHTVFPLDAWSLDLVHGFVWLSVSLTVSLQVKQHSRAWSWMFSVLLFFVSGILCALSMSCAIGSRKLSLEAAIDVLSFPGATLLMLCTYKACTCEDADKEIGERLYTPLNSQFNEFDTVGNVTPFSKAGFFSKSLFWWLNPFMKSGQEKTLLDEDIPELRETDRAESCYLSFVEQLNKQSQHESSSHSSVLWTITMCHRREILITGFFALLKVLTLSSGPLLLNEFISVAEGKKNFKYEGCVLAISLFFIKIIESLSQRQWYFRSRLVGMKVRSLLTAAIYKKILRLSNSARLVHSSGEIMNYMTVDVYRIGEFPFWFHKTWTTILQLSIALVILFQAIGLATIASLAVIVLTVICNTPLAKLQHKFQSKLMVAQDERLKASSEALVNMKVLKLYAWEIHFKNVVDYLRNVELKLLSDVQIRRTYHMFFFWTSPILVSGASFLACYFLNVPLNASNVFTFVATLRLVQDPISNISDVIAVIIQAKVAFARIVNFLDAPELQSEKCRKMCFNDNLKDRISIKCADFSWEASESKPTLTNINLDVRHGQNVAICGEVGSGKSTLLATILGEVSKTKGTIDVHGKFAYVSQTAWIQTGTVRENILFGSELDDQRYQETLQRSSLVKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKKLFNDYIMGGLKGKTVLLVTHQVDFLPAFDSILLMSCGEILHAGPYHQLLTSSQEFNDLVNAHKETASSDQFVSATFSQKHPTSINSMQASVLKQYKEPNGNQLIQQEEREKGDTGLKPYFQYLNRMKGYILFFVASLCHLIFVVCQILQNSWMAANVDNPLVSTLQLILVYFLIGALSSVFLFIRCLLVVTLGLQSSKDLFSQLMNSLFHAPMSFYDSTPLGRVLSRVSSDLSIVDLDIPFSLTFAVAGTIALYSNLTVLAIVTWPVLIVAIPMVYVAIHRQRYYFASAKEVMRLNGTTKSSLANHVAETVAGAVTIRAFEEEHRSFEKNLDLIDNNASAFFHSFASNEWLIQRLETTSAVVLAAATICLVMLPPGTFPSGIIGMALSYGLSLNGALVFAIQNQCTLANHIISVERLNQYMHIQSEAKEIVEGNRPPLNWPIAGKVEINDLKIRYRHGGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLIGALFRLVEPAEGKVVVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRFNLDPLSQHTDQEIWEVLRKCQLREVVQGKEEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLIVQKTIRAEFADCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPMSLMKREESMFRQLVKEYWSHFHSAESH 1475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04837 1475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 844 IPR003439 GO:0005524
Vifa1g04837 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 844 IPR027417 -
Vifa1g04837 1475 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 228 1463 - -
Vifa1g04837 1475 Pfam ABC transporter 1246 1394 IPR003439 GO:0005524
Vifa1g04837 1475 SMART AAA_5 1255 1447 IPR003593 GO:0016887
Vifa1g04837 1475 SMART AAA_5 648 829 IPR003593 GO:0016887
Vifa1g04837 1475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1219 1462 IPR027417 -
Vifa1g04837 1475 FunFam ABC transporter C family member 10 603 857 - -
Vifa1g04837 1475 Pfam ABC transporter transmembrane region 306 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04837 1475 Pfam ABC transporter transmembrane region 913 1172 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04837 1475 CDD ABC_6TM_ABCC_D2 915 1204 IPR044726 GO:0140359
Vifa1g04837 1475 CDD ABC_6TM_ABCC_D1 307 594 IPR044746 GO:0140359
Vifa1g04837 1475 Gene3D - 598 866 IPR027417 -
Vifa1g04837 1475 FunFam ABC transporter C family member 3 1212 1464 - -
Vifa1g04837 1475 Coils Coil 1100 1120 - -
Vifa1g04837 1475 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 306 586 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04837 1475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1229 1463 IPR003439 GO:0005524
Vifa1g04837 1475 Pfam ABC transporter 639 773 IPR003439 GO:0005524
Vifa1g04837 1475 SUPERFAMILY ABC transporter transmembrane region 294 601 IPR036640 GO:0005524|GO:0016020
Vifa1g04837 1475 CDD ABCC_MRP_domain1 621 817 - -
Vifa1g04837 1475 Gene3D - 1212 1465 IPR027417 -
Vifa1g04837 1475 SUPERFAMILY ABC transporter transmembrane region 901 1209 IPR036640 GO:0005524|GO:0016020
Vifa1g04837 1475 FunFam ABC transporter C family member 5 878 1210 - -
Vifa1g04837 1475 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 916 1192 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04837 1475 CDD ABCC_MRP_domain2 1227 1447 - -
Vifa1g04837 1475 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524|GO:0016887
Vifa1g04837 1475 Gene3D ABC transporter type 1, transmembrane domain 293 597 IPR036640 GO:0005524|GO:0016020
Vifa1g04837 1475 Gene3D ABC transporter type 1, transmembrane domain 877 1211 IPR036640 GO:0005524|GO:0016020
Vifa1g04837 1475 FunFam ABC transporter C family member 10 289 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04837 Vifa-Chr1 755934165 755940196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04837 434 877 Calmodulin-binding Proteins AT2G36910 25.212 4.00e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04837 K05666 - gmx:100787314 2235.68