Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04833 ATGGAAAAGGAAATGTGTGGTATTTCTGTTGAGAAAAGGCTTAGACTATTTGGTTTTGAGCTAGATCCAATTAAGAATAGTATTGAAGGACCTGTGAAAGAGTGTAATGAAGGAGATGAAAGTGTGAATTCCTCTAATTCATTTTCATCCGGAGAGAAAATTGTGCAAGAAAAAGTTTCATCTAGAGACCAAGATGAGAGAAAATTTGAGTGTCAATATTGTTTTAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCACACAAGAAAGAAAGAATGAAGAAAAAAAGATTGCAACTTCAAGCTAGAAAAGCTAGCATAAACTACTATTTACAACCTTTTCAAAAGAATCACCATAGTTTTTCTTCTTACCATGGTTCTTCTGATACTCATTGGTTTTATGACCCTTCTTCTTATAATAGCTCTGAATTCTCTTTGTGTGAAGAGTCTCAAATTAGTTTCAAGTCAAAAAATGTTCATGATGCCAATTCTTGGTATTCTTTCCCTTCTCATCATGTTCCTACCTCTCAACAAGACACTTGCATGTTTACTTTCTCTAATAATGATGTTAGGCCTTTCATTTTGGATCCTTCTTCAAATCAAAGTCATAGTAAAGCTTTAGATCTTCAATTAGGTCTCAATTTGGAGTCAAATTCAACAAGCTCTTTGAAAAGGATGTAG 690 0.3362 MEKEMCGISVEKRLRLFGFELDPIKNSIEGPVKECNEGDESVNSSNSFSSGEKIVQEKVSSRDQDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASINYYLQPFQKNHHSFSSYHGSSDTHWFYDPSSYNSSEFSLCEESQISFKSKNVHDANSWYSFPSHHVPTSQQDTCMFTFSNNDVRPFILDPSSNQSHSKALDLQLGLNLESNSTSSLKRM 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04833 229 PANTHER ZINC FINGER PROTEIN 5 10 219 IPR044299 GO:0010090
Vifa1g04833 229 FunFam zinc finger protein 5 44 122 - -
Vifa1g04833 229 SUPERFAMILY beta-beta-alpha zinc fingers 65 96 IPR036236 -
Vifa1g04833 229 MobiDBLite consensus disorder prediction 38 55 - -
Vifa1g04833 229 Gene3D Classic Zinc Finger 41 125 - -
Vifa1g04833 229 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Vifa1g04833 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Vifa1g04833 229 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04833 Vifa-Chr1 755638172 755638861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04833 9 112 C2H2 Transcription Factor Family AT1G68360 42.373 1.38e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g04833 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04833 - - gmx:100799857 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04833 1 755638172 755638861 Vifa1g04833 1 755638172 755638861 ECH