Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04831 ATGGAGGATTATTGGATCATGATTTGTTCTGAGAATGGAGGAAATCTTTTCAGTTATGATTTCAAGTTTTTGAAAGATCCTTCTTCATGTATTAACCACTTGTTGCTCATTTTCTTTGATTTATTCATGTTGATCATGTTATCAATCATCATGTTCTTAAAGTCTTCTTCGAGACCCTTTCGGAGTACAGCAAGATATTCAAACTTGCAGCTAGTTTCTGCCATAACCAATGGCTCTATTGGGTTGTTGTATTTATGCTTAGGAGTTTGGGTTTTAGAGGAGAAGTTAAGGAAAAATCACAATGTCTTTCCTCTTAACAGGTTGTTACTAGAATTCTTTCAAGGACTCACATGGTTGTTTGTAAGTTTAACTATAAGTCTTCAGATAAAACAACTCCCAAGAGTATGGTTGTGGCTGTTTTCTATTCTCATGTTCTTTGTTTCTAGTATATTATGTGTTTTATCGATGTCTTATGCAATTCGAAGCAGAGAACAGTCTCTCGCGGCAAGTTTAGATGTTATATCTTTTCCAGGAGCAATCCTGCTGATGTTATGCACTTACAAAGCATCTAAATGTGAAGATACTGTCGTAGACACTACCGAAAGCCTTTATGCTCCGTTGAATTGTCAGTTTAACGATGTTGTTCCTAATAACAATGTAACCTTATTTGCGAAAGCTGGATTCTTTAGTAAGATATCGTTTTGGTGGTTGAATCCATTGATGAAAAGGGGTCAAGAAAAAACACTTCAAGATGAGGATATTCCAACGTTACGAGAGTCTGAACGAACAGAAAGTTGTTATTTGTCATTTGTAGAACAAGTAAACAGACAGAGAGAAAATGAACCATCGTCGCGTTCATCGGTATTATGGACAATCGTTTTATGCCACCGGAGAGACATTTTTATAACAGGTTTCTTTGCTTTGATCAAGGTACTTGCTGTGTCTTGTGGCCCTCTACTTCTGAATTCCTTTATATTGGTTTCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATATGTTGGTCATATTACTCTTCGTCATGAAGATCGTAGAATCCATATCACAAAGACAATGGTATTTCCGAGGTAGAATTATTGGGATGAAAGTTAGAGCACTACTTACTGCAAGCATTTATAAAAAAGTATTACGGCTATCTAGTTCTTCTAGATTGATTCACTCTAGCGGTGAGATAATGAATTATATGACTGTGGATGCTTATAGAATCGGAGAATTTCCATTCTGGTTTCACCAGACATGGACAACAATCCTCCAATTGTGTATTGCGATAGTAATTCTTTTCAGAGCAATTGGACTAGCAACAATAGCTTCATTGGTGGTTATAGTTCTCACCGTGCTATGCAACAGTCCGATAGCAAACTTACAACACAAGTTTCAGAGCGAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTAGTTCTGAGGCTCTCGTGAATATGAAAGTGCTAAAGCTATACGCATGGGAAATCCATTTTAAAAATGCTATAGAAAAGTTAAGAAATGTGGAACTCAAATTGATATCTGCAGTGCAATTAAGTAAGGCATACCTTCTCTTTCTCTTTTGGACCTCGCCGGTGTTGGTGTCTGCTGCTTCTTTTCTAGCATTTTACTTCCTCGAAGTTCCTTTGCATGCAAGCAATGTTTTCACTTTTGTGGCAACTTTACGCCTTGTTCAAGATCCGATTACTGGTATCCCGGATGTAATTACGGTGATCATTCAAGCAAAAGTTGCATTTGCTCGGGTTCGTAATTTCCTCGAGGCACAAGAACTACAGAGTGCAAATTTCAAGAGCAGGTGCTTTAACGACAACCTCAAAGGCTCAATTTTAATAAAATCAGCCGACTTTTCATGGGAAGGTAATGTATCAAAGCCGATACTAAGAAACATAAATTTGGACGTTAAACACGGACAAAAAGTGGCTATTTGTGGAGAAGTTGGTTCCGGAAAATCAACTCTTTTAGCAACAATTCTAGGAGAAGTTCCTAATACAAAGGGAACTATTCGTGTTTATGGGAAGTTTGCATATGTTTCCCAAACAGCATGGATCCAAACAGGTACGATACGAGAAAATATTTTGTTTGGATCTGAGTTGGACGATCAAAGATATCAAGAAACTGTTCAAAGGTCTTCCCTGGCGAAGGACCTTGAGTTGCTTCCCTTTGGCGACCTCACTGAAATAGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAGAAGCAGCGAATTCAACTAGCCCGGGCTCTTTATAAGAACGCTGATATATATCTATTGGACGATCCATTTAGTGCGGTTGATGCACATACCGCAAAAAATTTATTTAATGAATACATTATGGAAGGACTCAAAGGGAAAACTGTCTTACTTGTGACTCATCATGTTGATTTTCTCCCAGCATTTGATTTTGTTTTGTTGATGTCAAATGGGGTAATCCTAGAAGCTGGTCCATTTCACTACCTATTGACAACAAGCCGAAAATTTCACAACCTTGTCAATGCTCACAGGGAAACTGCTGGTTCAAACGAGCTTGTGAATGTTACAGTTACCAAGAGATTTTCAACTTCTAGCAAGTTGATTTTAGTTTATTTCCTAATCGGAGTTTCTTCGACCTTTTTCGCGTTGATCAGAAGTCTGTTTGTAGTTGCTTTGGGACTTCAATCTTCAAAACACTTTTTCTTCCAGCTGATGAACTCCCTCTTTCGTGCACCAATGTCTTTCTATGACTCTACACCATTAGGAAGGATACTAAGTAGGGTTTCATCTGATTTGAGCATTATGGATCTTGACGTCCCATTTAGCCTCACTTTTGTCGTGGGATCGAATATAAATTTTTATTCGAGTCTTACAGTTTTAGCTGTTGTCACTTGGCAAGTATTGATTGTAGCTATACCAATGATTTACGTTACAATTCGCTTGCAGAAATACTACTTCGCCTCAGCAAAAGAAGTGATGCGCATGAGTGGCACAACGAAATCCTGCTTAGTTAACCATGTAGCTGAAACTGTTGCAGGAGCTGTGACAATAAGAGCTTTTCATGAGGAAGATCGTTTTTTCAAGAAGAATCTTGATCTAATTGACATTAATGCTAGTGCGTTTTTTAATAGTTTTGCCTCAAACGAGTGGTTGATCCAACGGTTAGAAACAATAAGCGCAGGTCTTCTTGCCTCTGCAGCGCTTTGCATGGTTATACTTCCACCAGGGACATTCACTTCTGGGTTTATTGGTATGGCTCTATCTTATGGTCTTGCACTAAATTTTTCCTTGGTATCTTCAATTCAAACTCAATGCACTATTGCAAATCATATAATATCAGTAGAGAGGCTAAACCAATATATGCATATACAAAGTGAGGCCGAAGAAATAGTAGAAGGAAACCGTCCTCCTTTGAATTGGCCGATTGCGGGCAAAGTAGAAATAAATGACTTGAAGATACGATACAGGCCTGATGGACCACTAGTACTTCATGGGATCACATGCACATTTGAAGCAGGTCACAAGATTGGTATTGTAGGAAGAACGGGAAGTGGGAAATCTACTCTTATTAGTGCTTTATTTCGTCTTGTGGAACCAACAGGAGGAAAAGTTGTAGTTGATGGCGTAGATATATCGTCTATTGGCCTTCATGATTTGAGGTCACGTTTTGGGATTATACCTCAGGATCCTACCCTTTTTAACGGGACAGTAAGATATAACTTGGACCCTTTATCCCAACACACTGATCAAGAGATATGGGAGGTTCTTGAGAAGTGTCAATTGCGAGAAGTTGTCCAAGAGAAAAACGAGGGCTTAAACTCCTCAGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGACAGTTATTCTGTTTGGGGCGCGCTCTTTTAAGGAGAAGTAGAATATTGGTACTGGATGAAGCAACTGCATCAATTGATAACTCAACTGATTTGATTCTGCAGAAAACCATTAGAACGGAGTTTGCAGAATGTACCGTGATCACAGTAGCACACAGGATACCGACTGTGATGGATTGCACTATGGTTCTTTCAATCAGTGATGGAAAATTGGCAGAGTATGACGATCCAATGAGCTTGATGAAGCGAGAAGAATCTTTGTTCAGGAAACTTGTCAAAGAATATTGGTCTCATTTTCAGTGTGCGGAATCACATTGA 4170 0.3885 MEDYWIMICSENGGNLFSYDFKFLKDPSSCINHLLLIFFDLFMLIMLSIIMFLKSSSRPFRSTARYSNLQLVSAITNGSIGLLYLCLGVWVLEEKLRKNHNVFPLNRLLLEFFQGLTWLFVSLTISLQIKQLPRVWLWLFSILMFFVSSILCVLSMSYAIRSREQSLAASLDVISFPGAILLMLCTYKASKCEDTVVDTTESLYAPLNCQFNDVVPNNNVTLFAKAGFFSKISFWWLNPLMKRGQEKTLQDEDIPTLRESERTESCYLSFVEQVNRQRENEPSSRSSVLWTIVLCHRRDIFITGFFALIKVLAVSCGPLLLNSFILVSEGNESFKYEGYMLVILLFVMKIVESISQRQWYFRGRIIGMKVRALLTASIYKKVLRLSSSSRLIHSSGEIMNYMTVDAYRIGEFPFWFHQTWTTILQLCIAIVILFRAIGLATIASLVVIVLTVLCNSPIANLQHKFQSELMVAQDERLKASSEALVNMKVLKLYAWEIHFKNAIEKLRNVELKLISAVQLSKAYLLFLFWTSPVLVSAASFLAFYFLEVPLHASNVFTFVATLRLVQDPITGIPDVITVIIQAKVAFARVRNFLEAQELQSANFKSRCFNDNLKGSILIKSADFSWEGNVSKPILRNINLDVKHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIRVYGKFAYVSQTAWIQTGTIRENILFGSELDDQRYQETVQRSSLAKDLELLPFGDLTEIGERGVNLSGGQKQRIQLARALYKNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTVLLVTHHVDFLPAFDFVLLMSNGVILEAGPFHYLLTTSRKFHNLVNAHRETAGSNELVNVTVTKRFSTSSKLILVYFLIGVSSTFFALIRSLFVVALGLQSSKHFFFQLMNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDVPFSLTFVVGSNINFYSSLTVLAVVTWQVLIVAIPMIYVTIRLQKYYFASAKEVMRMSGTTKSCLVNHVAETVAGAVTIRAFHEEDRFFKKNLDLIDINASAFFNSFASNEWLIQRLETISAGLLASAALCMVILPPGTFTSGFIGMALSYGLALNFSLVSSIQTQCTIANHIISVERLNQYMHIQSEAEEIVEGNRPPLNWPIAGKVEINDLKIRYRPDGPLVLHGITCTFEAGHKIGIVGRTGSGKSTLISALFRLVEPTGGKVVVDGVDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLEKCQLREVVQEKNEGLNSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNSTDLILQKTIRTEFAECTVITVAHRIPTVMDCTMVLSISDGKLAEYDDPMSLMKREESLFRKLVKEYWSHFQCAESH 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04831 1389 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1133 1376 IPR027417 -
Vifa1g04831 1389 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 859 1377 - -
Vifa1g04831 1389 SUPERFAMILY ABC transporter transmembrane region 289 589 IPR036640 GO:0005524|GO:0016020
Vifa1g04831 1389 CDD ABCC_MRP_domain1 616 815 - -
Vifa1g04831 1389 Gene3D - 1127 1378 IPR027417 -
Vifa1g04831 1389 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 839 IPR003439 GO:0005524
Vifa1g04831 1389 FunFam ABC transporter C family member 3 1126 1378 - -
Vifa1g04831 1389 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 839 IPR027417 -
Vifa1g04831 1389 FunFam ABC transporter C family member 5 831 1124 - -
Vifa1g04831 1389 FunFam ABC transporter C family member 5 606 847 - -
Vifa1g04831 1389 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1143 1377 IPR003439 GO:0005524
Vifa1g04831 1389 Gene3D ABC transporter type 1, transmembrane domain 836 1125 IPR036640 GO:0005524|GO:0016020
Vifa1g04831 1389 Gene3D ABC transporter type 1, transmembrane domain 271 597 IPR036640 GO:0005524|GO:0016020
Vifa1g04831 1389 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Vifa1g04831 1389 SMART AAA_5 1169 1352 IPR003593 GO:0016887
Vifa1g04831 1389 SMART AAA_5 643 816 IPR003593 GO:0016887
Vifa1g04831 1389 Pfam ABC transporter 634 768 IPR003439 GO:0005524
Vifa1g04831 1389 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 864 1106 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04831 1389 Pfam ABC transporter transmembrane region 853 1078 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04831 1389 Pfam ABC transporter transmembrane region 301 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04831 1389 CDD ABC_6TM_ABCC_D1 302 589 IPR044746 GO:0140359
Vifa1g04831 1389 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 301 581 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04831 1389 CDD ABC_6TM_ABCC_D2 859 1118 IPR044726 GO:0140359
Vifa1g04831 1389 CDD ABCC_MRP_domain2 1141 1361 - -
Vifa1g04831 1389 SUPERFAMILY ABC transporter transmembrane region 855 1125 IPR036640 GO:0005524|GO:0016020
Vifa1g04831 1389 Pfam ABC transporter 1160 1308 IPR003439 GO:0005524
Vifa1g04831 1389 Gene3D - 612 835 IPR027417 -
Vifa1g04831 1389 FunFam ABC transporter C family member 10 284 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04831 Vifa-Chr1 754960747 754970893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04831 610 847 Calmodulin-binding Proteins AT2G36910 33.463 1.93e-27 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04831 K05666 - egt:105971630 1713.74