Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04828 ATGCCGGGACGTCGGTCGAAGTCGGAGAAGAAAGATGACGACGAGAAGCAGCTCCGGCGTGACCCGTATGAAGTCCTTGGCGTTAATCGGAACTCCACCGATCAGGAGATTAAATCGGCTTACCGGAAAATGGCTCTCAAGTTTCATCCAGACAAGAATGCTAATGATCCCAAAGCAGCTGATATGTTCAAAGAGGCTACCTTTTCTTACAATATCTTGGCGGATCCTGAGAAACGGCGTCAGTATGACTCATCTGGATTTGAGGCCGTTGAGTCAGATAACCAAGAGTTAGAGTTGGATCTTTCAAGTTTGGGTGCTGTCAACACGATGTTTGCTGCACTTTTTAGCAAACTTGGGGTACCAATCAAGACAACTGTATCTGCGACTGTTTTGGAAGAGGCACTCAATGGGTTAGTTACAATTCGCCCACTTCCATTGGGAGAGTTCATATCTAAAAGGGTTGAGAAGCAGTGTGCACATTTTTATTCAGTTACAATAACAGAAGAGGAAGCAAGAGCTGGATTTGTTTGTCGAGTACAATCATCAGACAAAAGCAAGTTCAAGTTATTATATTTCGACCAGGAAGACAATGGTGGCTTTAGTCTTGCGCTCCAGGAAGACAGTGCAAAAAATGGAAAGTTTACTTCTGCTGGAATGTATTTTCTTGGCTTTCCTGTTTATCGGCTAGATCAAACAATGAACTCCATAGCTGCTGCCAAGGATCCAGATACTTCATTCTTCAAAAAGCTTGATGGGTTCCAGCCCTGTGAATTAACTGAATTGAAGGCTGGTACCCATACATTTGCGGTTTATGGTGACAACTTTTTCAAAAGTGCAAACTATACAATAGAAGTCCTGTGTGCTGCACCTTTTAATGAAGAAAAAGAAAATTTAAGAAATGTAGAAGCTCAAATTTTGTCTAAAAGAGCAGAAATATCAAAGTTTGAGTCAGAATATCGAGAGGTTCTTGCACAATTCACAGAAATGACAAGCAGATATGCACATGAAATGCAAACGATTGACGAACTATTGAAACAGAGAAATGAAATACATGCCTCGTACACGGTTGTTCCTTTAAAACGGAGTGGTAGCAGCAAGGGCAGAAGTAGAACATCTTCAAAGGAGTCAAAAGAAGATGGTGAAGCAAGAGAAAAGAGGAGTACAAGAGAACGACCAAGGAAGAAAAAATGGTATAATCTCCACTTAAGAGTTGACAAGAGAAAGGCTTGCTAA 1233 0.4136 MPGRRSKSEKKDDDEKQLRRDPYEVLGVNRNSTDQEIKSAYRKMALKFHPDKNANDPKAADMFKEATFSYNILADPEKRRQYDSSGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGLVTIRPLPLGEFISKRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEDNGGFSLALQEDSAKNGKFTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFKKLDGFQPCELTELKAGTHTFAVYGDNFFKSANYTIEVLCAAPFNEEKENLRNVEAQILSKRAEISKFESEYREVLAQFTEMTSRYAHEMQTIDELLKQRNEIHASYTVVPLKRSGSSKGRSRTSSKESKEDGEAREKRSTRERPRKKKWYNLHLRVDKRKAC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04828 410 SUPERFAMILY Chaperone J-domain 20 90 IPR036869 -
Vifa1g04828 410 Pfam DnaJ domain 21 83 IPR001623 -
Vifa1g04828 410 CDD DnaJ 21 75 IPR001623 -
Vifa1g04828 410 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
Vifa1g04828 410 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 6 409 - -
Vifa1g04828 410 SMART dnaj_3 20 78 IPR001623 -
Vifa1g04828 410 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g04828 410 Coils Coil 291 318 - -
Vifa1g04828 410 ProSiteProfiles dnaJ domain profile. 21 86 IPR001623 -
Vifa1g04828 410 PRINTS DnaJ domain signature 78 97 IPR001623 -
Vifa1g04828 410 PRINTS DnaJ domain signature 41 56 IPR001623 -
Vifa1g04828 410 PRINTS DnaJ domain signature 23 41 IPR001623 -
Vifa1g04828 410 PRINTS DnaJ domain signature 58 78 IPR001623 -
Vifa1g04828 410 Gene3D DnaJ domain 5 104 IPR036869 -
Vifa1g04828 410 MobiDBLite consensus disorder prediction 368 388 - -
Vifa1g04828 410 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g04828 410 FunFam Chaperone protein dnaJ 16 4 103 - -
Vifa1g04828 410 MobiDBLite consensus disorder prediction 356 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04828 Vifa-Chr1 754621775 754625594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04828 19 84 C2H2 Transcription Factor Family AT1G74250 40.845 2.28e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04828 - - gmx:100800929 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04828 1 754621775 754625594 Vifa1g04828 1 754621775 754625594 ECH