Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04810 ATGGCAGATCTTGTTAACTACGGGAATGGTGATCGTAATATTGAGCAAGCGTTGATTGCTTTGAAAAAGGGAGCTCAACTACTTAAATATGGTCGTAAGGGAAAACCAAAATTTTGTCCATTTAGACTCTCACATGATGGATCATCTTTAACCTGGATTTCAAGCGGCGGCCAAAAACAACTAAAGCTATCATCTGTCTCAAGAATCATTCCTGGACAAAGAACTGCTGTTTTCCAACGGTACCTGCGTCCCGAGAAGGACTACGTGTCTTTTTCACTTATTTATAAGAACGGAAAGCGGTCTCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGACGTGTGGATTTCTGGTCTCAAAAAACTGATATTCTCAGGTCAAGGCGGTCGGTCCAAAATTGATGGATGGAGTGACGGGGGCCTCAATCTTGATGATAACAAAGACTTAACATCCAATAGTCCAAGTGACAGTTCAGCTAGTGCGTCACTAGACATCAGTTCTCCTGACATTTCCGTGAGTCTTCCTAATACTTCACCGAACTCCTTTCGGCCTGACAATACCTTAAATACTGAAAGGTCACATGCACCATCTGACTCAACAAATATGATACTAAAAGGACCTAGCAATGATACTTTTCGGGTTAGTGTTTCAAGTGCCCCCAGCACATCTAGTCATGGATCTGCACATGATGACTATGATGCTCTGGCGGATGTATACATATGGGGGGAAATCATCTGCGAAAACGTGAAAGTCGATGTCGATAAAAGCGTCCATTATTTCAGCCCAAGGGCAGATGTGCTTCTCCCGAGACCACTGGAATCTAATGTAGTTTTAGACATACAACATATAGCATGTGGTGTTAGACATGCTTCGATAGTCACTAGGCAAGGTGAAATTTTTACGTGGGGTGAAGAATCGGGAGGACGCCTTGGTCACGGCGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCGTTGACTTCTGCAACAGTTGACTTTGTTGCTTGCGGGGAGTTCCATTCCTGCGCTGTTACTATGACTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCAGGGTTGCTTGGTCATGGCTCTAATGTTAGTCAGTGGATGCCAAAGAGAGTCGAGGGTCCATTAGAGGGCCTTCAAGTTTCATCTGTTGCTTGTGGTCCATGGCACACAGCCTTGATTACTTCAACCGGGAAGCTCTTTACATTTGGTGATGGAACTTTCGGTGTCTTGGGACATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGAATCGTTGTTGGGGTTGAGGACGATAGCTGTTGCATGTGGAGTATGGCATACTGCAGCTGTTGTAGAGGTTATCGCAACACAATCTGTTGCTAGTTTATCGTCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGGCATGGGGACAAGGAGGCACGACTTACACCAACTTGTGTGCCTGCTATTATCGATTACGATTTTCAAAGAATTGCTTGTGGGCACAGTTTGACAGTAGGACTGACAACATCTGGACGAGTTTTTACCATGGGAAGTACTGTTTACGGTCAACTTGGGAATCCTCAGTCTGATGGAAAGCATCCATGCTTGGTTGGAGATAAGATTGCGTCCGAATCCGTTGAAGAAATTGCTTGTGGTGCATATCATGTGGCTGTTTTAACATCCAAAAATGAAGTTTACACTTGGGGTAAAGGTTCAAATGGGAGATTAGGTCATGGAGATATTGAAGATAGAAAAACACCAACTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAATTACTCTGCCGCCATATGCCTTCATAAATGGGTATCTGGTGCCGAGCAGTCTCAGTGCTCAGCTTGTAGACAAGCATTTGGCTTCACACGAAAGCGGCACAATTGTTATAATTGTGGACTTGTGCACTGTCATTCATGTAGTTCAAAGAAAGCATTAAGAGCGGCACTGGCTCCTAACCCTGACAAGCCCTACCGTGTGTGTGATTCTTGTTATGCCAAATTGAGCAAGGTTGCAGAAGCTAACAACCATAATAGGAGGAACTCTTTGCCGCGTCTCTCAGGTGAAAACAAGGATAGGTTAGACAAGTCTGAGCTAAGATTGTCTAAGGCTGTTGTTCCTTCAAATATGGAGTTGATAAAGCAGCTAGATAGTAAGGCTGCCAAACAAGGAAAGAAAGCTGATACATTCTCCCTAGTTCGCAATTCACAAACCCCTTTGCTACAGCTGAGAGATGTTGTCTTCTCCACTGCTGCTGATCTGAGACGAACCGCACCAAAGCCGGTGATTGCAGCATCGAGAGTAAGTTCTAGATCCACATCCCCTTTCTCTAGAAGATCAAGCCCTCCTCGTTCAGCTACGCCTATTCCAACAATGTCGGGACTTTCGTTCTCCAAAAATACTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTACGTTCTCAGGTTGAGATCCTGAAACAAAGATGTAAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCTATGGCACTTGCTACTGAGGAGTCTACTAGAAGAAAAGCTGCAAAAGAAGTTATGAAGTCACTTACGTCACAGATCAAAGATCTAGCTGAGAAGCTTCCTCCTGAAGTTTATGATGCTAAGAACATTAGACAAGCTTACCTACCGAATGGTCTCGAGTCAAACAGAAATCACTATCCAGATTCAAACGGGGAGCGGCATGCGTATGCAGAATCAATCATCAGTCACTCTAGTCTAGCCTCCATAAAACTCGAGTCCTCTCTGTTCAGAACCGCAGGTGATTTTCCAGAAGCCAACGGAACTAACCTCCACCACCAAATCCGGGGTATTGTTACCTCTAACGGGACTGGTAATTATCCAGATGTTAAATTGCCGAATGGCAGCGGCATGATTCCGTCGAGCAGTAGTAGCTTGTCAGATATTGTTGAAGAATGGATTGAACAGTATGAACCTGGTGTGTATATAACACTGGTGGCCATGCACGATGGAACGAGAGATCTGAAACGAGTGCGCTTTAGCCGGAGGAGATTTGGAGAGAACCAAGCAGAAAATTGGTGGTCAGAGAACCGAGACATGGTATACGAAAAATACAATGTTCGTACCACGGACAAGTCTTCTAACCAAGCAGCGCATAAGTCAGACGTTGCTGGTTCTCCTATCTCCCAAACATAG 3270 0.4398 MADLVNYGNGDRNIEQALIALKKGAQLLKYGRKGKPKFCPFRLSHDGSSLTWISSGGQKQLKLSSVSRIIPGQRTAVFQRYLRPEKDYVSFSLIYKNGKRSLDLICKDKVEADVWISGLKKLIFSGQGGRSKIDGWSDGGLNLDDNKDLTSNSPSDSSASASLDISSPDISVSLPNTSPNSFRPDNTLNTERSHAPSDSTNMILKGPSNDTFRVSVSSAPSTSSHGSAHDDYDALADVYIWGEIICENVKVDVDKSVHYFSPRADVLLPRPLESNVVLDIQHIACGVRHASIVTRQGEIFTWGEESGGRLGHGVGKNVVQPRLVEALTSATVDFVACGEFHSCAVTMTGELYTWGDGTHNAGLLGHGSNVSQWMPKRVEGPLEGLQVSSVACGPWHTALITSTGKLFTFGDGTFGVLGHGDRENVSYPREVESLLGLRTIAVACGVWHTAAVVEVIATQSVASLSSGKLFTWGDGDKNRLGHGDKEARLTPTCVPAIIDYDFQRIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKHPCLVGDKIASESVEEIACGAYHVAVLTSKNEVYTWGKGSNGRLGHGDIEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPDKPYRVCDSCYAKLSKVAEANNHNRRNSLPRLSGENKDRLDKSELRLSKAVVPSNMELIKQLDSKAAKQGKKADTFSLVRNSQTPLLQLRDVVFSTAADLRRTAPKPVIAASRVSSRSTSPFSRRSSPPRSATPIPTMSGLSFSKNTADSLKKTNELLNQEVQKLRSQVEILKQRCKLQELELQRSAKKTQEAMALATEESTRRKAAKEVMKSLTSQIKDLAEKLPPEVYDAKNIRQAYLPNGLESNRNHYPDSNGERHAYAESIISHSSLASIKLESSLFRTAGDFPEANGTNLHHQIRGIVTSNGTGNYPDVKLPNGSGMIPSSSSSLSDIVEEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAENWWSENRDMVYEKYNVRTTDKSSNQAAHKSDVAGSPISQT 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04810 1089 SUPERFAMILY FYVE/PHD zinc finger 623 697 IPR011011 -
Vifa1g04810 1089 SUPERFAMILY PH domain-like 14 123 - -
Vifa1g04810 1089 ProSiteProfiles BRX domain profile. 1009 1064 IPR013591 -
Vifa1g04810 1089 MobiDBLite consensus disorder prediction 783 817 - -
Vifa1g04810 1089 FunFam PH, RCC1 and FYVE domains-containing protein 1 207 456 - -
Vifa1g04810 1089 PRINTS Chromosome condensation regulator RCC1 signature 349 365 IPR000408 -
Vifa1g04810 1089 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Vifa1g04810 1089 PRINTS Chromosome condensation regulator RCC1 signature 406 420 IPR000408 -
Vifa1g04810 1089 PRINTS Chromosome condensation regulator RCC1 signature 566 587 IPR000408 -
Vifa1g04810 1089 PRINTS Chromosome condensation regulator RCC1 signature 299 315 IPR000408 -
Vifa1g04810 1089 PRINTS Chromosome condensation regulator RCC1 signature 508 526 IPR000408 -
Vifa1g04810 1089 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 59 894 - -
Vifa1g04810 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Vifa1g04810 1089 MobiDBLite consensus disorder prediction 145 206 - -
Vifa1g04810 1089 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Vifa1g04810 1089 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Vifa1g04810 1089 Coils Coil 878 898 - -
Vifa1g04810 1089 Coils Coil 815 863 - -
Vifa1g04810 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Vifa1g04810 1089 Gene3D - 187 456 IPR009091 -
Vifa1g04810 1089 Pfam Transcription factor BRX N-terminal domain 873 908 IPR027988 -
Vifa1g04810 1089 SUPERFAMILY RCC1/BLIP-II 237 624 IPR009091 -
Vifa1g04810 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
Vifa1g04810 1089 Gene3D - 457 635 IPR009091 -
Vifa1g04810 1089 CDD PH_PLC_plant-like 12 124 - -
Vifa1g04810 1089 MobiDBLite consensus disorder prediction 786 817 - -
Vifa1g04810 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
Vifa1g04810 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Vifa1g04810 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 404 452 IPR000408 -
Vifa1g04810 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 466 513 IPR000408 -
Vifa1g04810 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 349 400 IPR000408 -
Vifa1g04810 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Vifa1g04810 1089 Pfam Transcription factor regulating root and shoot growth via Pin3 1009 1063 IPR013591 -
Vifa1g04810 1089 MobiDBLite consensus disorder prediction 1068 1089 - -
Vifa1g04810 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 696 IPR013083 -
Vifa1g04810 1089 Gene3D - 13 128 IPR011993 -
Vifa1g04810 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Vifa1g04810 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Vifa1g04810 1089 SMART fyve_4 621 690 IPR000306 GO:0046872
Vifa1g04810 1089 FunFam Putative E3 ubiquitin-protein ligase HERC1 629 697 - -
Vifa1g04810 1089 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Vifa1g04810 1089 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Vifa1g04810 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Vifa1g04810 1089 FunFam PH, RCC1 and FYVE domains-containing protein 1 457 628 - -
Vifa1g04810 1089 Pfam Pleckstrin homology domain 15 122 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04810 Vifa-Chr1 752600559 752607691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04810 882 1080 Major Intrinsic Protein MIP AT1G31880 31.220 4.86e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04810 - - gmx:100805364 1736.08