Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04800 ATGGCTGAGGCTGTGCTTGAAATCGTGCTTCACAATTTGAACTCACTCATTCAAAAAGAGCTTGGCTTATTTCTTAGTTTCGGTAGTAAATTAGAAAGTCTTTCCAGCTTGCTAACTACAATCAAGGCTACTCTTGAAGATGCTGAGGAGAAACAATTCACTGACAGAGCTATCAAGGATTGGCTGCTCAAGCTCAAAGATACTGCTCACATCCTCGACAACATCTTGGACGAGTGTGCCACTCATGTGCTGGAGATGGAGTCTAAAGGACTGTCACACAAGGTACAAAGCTCTTTCTTATTCTCTTTTCATCCAAAGCATGTCGCTTTCCGTTACAAAATTGCTAAGAAAATGAAGAACATAAGAGAGAGGTTAGATGAAATCGCTGAAGAAAGGACCAAATTTCATTTGACTAAGATTGTTAGAGAGAAGAGAAGTGGAGTCCTTGACTGGCGCCAAACAACTTCAATCATTACTCAACCTCAAGTCTACGGAAGAGATGAAGATAAGGATAGAATTATAGACTTTTTGGTCGGTGATGCTTCTAGTGTTGAGGATTTATCTGTTTGTCCAATAGTTGGTCTTGGTGGACTTGGAAAAACAACACTTGCCCAACTTATCTTCAATCATGAGAAGATAGTCAGTCATTTTGAGCAGAGAATCTGGGTATGTGTCTCAGAAGATTTTAGTTTGAAGAGAATGACAAAAGCCATCATAGAATCAGCAACTGGCCATGCTTGTGCAGAATTAGATCTAGAGCCATTACAAAGAAAACTTCAAGATTTTCTAAAAGGAAAAAGGTACTTGCTAGTGCTGGATGATGTATGGGATGATGAACAAGAGAACTGGCAGAGGTTGAAATCTGTATTGGCATGTGGGGGAAAAGGCACATCAATTTTGGTCACCACTCGTCTTCTAAAGGTTGCAGCAATCATGGGAACAATACCCCCTCATGATTTATCAATTCTATCAGACACCGATTGTTGGGAATTGTTGAAGCAAAGAGCCTTTGGACCAAATGAGGAAGAGAGGGAAGAACTTGTGGTCATAGGAAAGGAGATAGTAAAGAAGTGTGGGGGAGTGCCTCTTGCGGCAATGGCATTAGGAAGTTTCTTGCGATTCAAAAGAGAGAAAATAGAGTGGCTCAATGTCAAGGAAAGCAAGCTATGGAATATACAAGGTGAAGATCATGTCATGTCAGCCTTAAGATTAAGCTACTTGAATTTGCCGGTAAAATTGAGACCTTGTTTTGCCTTGTGCGCACTGTTTCCCAAAGATGAAAAAATAAACAAGAAGTTTTTGATTGAACTTTGGATGGCTAATGGTTTCATTTCATCCAATGCAATGCTGGAAGCAGAAGATATCGGCAATGAGGTGTGGAATGAGTTATATTGGAGATCATTTTTTCAAGATATAGAGAAAGATGATGTTGGTGAAATTGAAAAATTTAAAATTCACGACCTTGTTCATGATCTTGCTCAATCTATTGCAGAAGAGGTTAGTTGTTGCATTACAGAACCCAGCCTATCTAAAAGAATCCACCACCTCGCAACTTATAGTTGGGAATCATCGAGGTTAGTCAGTTCAATACAATTACATGAGATCATATCATTGAAGACTCTTATAATTTGTCGATCCAATTGTTCACTACCTCGTGTACTAAAATGTTATTCTTTACGAGTACTTCATTTCCAAAATATGAAAGAGTTGCCATCTCAGATTTTTCATTTGAAACATCTAAGATACTTGAATCTTTCTTGGGGAAAATTCAAAACTCTTCCAGAATCCTTATGCAAGTTATGGAATTTGCAGATTTTAAAGTTAGATTATTGTTTAAGCCTCCAAAGATTGCCTTATAGGTTGGTAGAGTTGAAAGCTCTACAACATCTATCTTTAGAGGGCTGTTACTCACTATCTAGCTTGCCTCCGCATGTAAAGAAATTGGCTTCCCTAAAAACTTTAACCACGTATGTAGTTGGCAAGAAAAAAGGGTTTCTTTTGGCAGAACTAGGACAAATGAACCTTAAAGGAACCCTTTGCATTACACATTTGGAGAGAGTTATAAGCGTGGTGAATGCCAAAGAAGCTAATATGTTGAGAAAGCACCTGAATAATCTGGAATTGTCATGGGAGAGAAATGAAGATTCTCAATTACAAGAAAATGTTGAGGAGATTCTTGAAGTGCTTCAACCTCAAACCCAACAACTTCAAAGGATGGTAGTGAGTGGATATACAGGTGCCTATTTCCCACGATGGATGTCTAGTTCCTCTCTAAATATTTTAACTAGTCTACATCTTGTGAATTGCCAAAGTTGTTTACACCTTCCACACTTAGGGAAACTTCCTTCTCTAAAGAAACTATCAGTATCTAAAATGAGTCACGTAAAATACCTATATGAAGAATCATCCAATGGTGGAGTTGCAGGAGGTTTCACAAAACTAGAATATTTGAGACTGCATGAGTTGCCGAACCTGGTAAGGTTATCAAGGGAGGATAGAGATAACATGTTTCTATGCCTTTCAACACTTATGATTATTGAATGTCCTACATTGTTGGAATTGCCTTGTCTTCCATCTCTGGGTTATTTGCATGTACGAGGGAAATGCAGCCAACATGTACTAAGTTCAATTCGTAAACATCATACTCTTGAAGTCCTTTGTTTCGAAAATAATGAAGAGCTAAGTTTCTTTCCAGATGGGATGCTAAGAAACCTCACTTCTCTAAAAAAAATTGAGATTGTTGGCCTTTCTAAGCTTGAGCAACTCCCAACTGAAATCAATAATAATAATTCTATCCAAGAGATAAATATCGATGGTTGCGAGAACCTCAAGTCATTGCCAGATGAACTAATACCTGGGTTGCACTCTCTGAAGAGATTGAGCATTGCAAGATGTCAAAAGTTCAATCTCTCAGAAAGTTTTCAATATCTCACTTGTCTTGAGAAATTGATAATCCAAAGTTGCCCAGAAATAGAAGTCTTGCATGAGGCATTACAACATATGACTGCTCTTCAATTTTTGGCATTGGGTGATCTTCCAAACCTAACATCCCTACCAGACTGGTTAGGAAACCTAAGCTTGCTTCACGGTTTGGAGATTTATAATTGTCCAAAGCTGACATGTCTTCCCACGAGTATTCAACGCCTTACTAGTCTGACAAGTTTGAATATTTACAATTGCAGTGAGTTAGGGAAACGATGTAAAAAGAACACGGGCGAGGATTGGCATAAAATATCTCACATTCAATTCATTTATGTTTCAAAACCCTAG 3270 0.3829 MAEAVLEIVLHNLNSLIQKELGLFLSFGSKLESLSSLLTTIKATLEDAEEKQFTDRAIKDWLLKLKDTAHILDNILDECATHVLEMESKGLSHKVQSSFLFSFHPKHVAFRYKIAKKMKNIRERLDEIAEERTKFHLTKIVREKRSGVLDWRQTTSIITQPQVYGRDEDKDRIIDFLVGDASSVEDLSVCPIVGLGGLGKTTLAQLIFNHEKIVSHFEQRIWVCVSEDFSLKRMTKAIIESATGHACAELDLEPLQRKLQDFLKGKRYLLVLDDVWDDEQENWQRLKSVLACGGKGTSILVTTRLLKVAAIMGTIPPHDLSILSDTDCWELLKQRAFGPNEEEREELVVIGKEIVKKCGGVPLAAMALGSFLRFKREKIEWLNVKESKLWNIQGEDHVMSALRLSYLNLPVKLRPCFALCALFPKDEKINKKFLIELWMANGFISSNAMLEAEDIGNEVWNELYWRSFFQDIEKDDVGEIEKFKIHDLVHDLAQSIAEEVSCCITEPSLSKRIHHLATYSWESSRLVSSIQLHEIISLKTLIICRSNCSLPRVLKCYSLRVLHFQNMKELPSQIFHLKHLRYLNLSWGKFKTLPESLCKLWNLQILKLDYCLSLQRLPYRLVELKALQHLSLEGCYSLSSLPPHVKKLASLKTLTTYVVGKKKGFLLAELGQMNLKGTLCITHLERVISVVNAKEANMLRKHLNNLELSWERNEDSQLQENVEEILEVLQPQTQQLQRMVVSGYTGAYFPRWMSSSSLNILTSLHLVNCQSCLHLPHLGKLPSLKKLSVSKMSHVKYLYEESSNGGVAGGFTKLEYLRLHELPNLVRLSREDRDNMFLCLSTLMIIECPTLLELPCLPSLGYLHVRGKCSQHVLSSIRKHHTLEVLCFENNEELSFFPDGMLRNLTSLKKIEIVGLSKLEQLPTEINNNNSIQEINIDGCENLKSLPDELIPGLHSLKRLSIARCQKFNLSESFQYLTCLEKLIIQSCPEIEVLHEALQHMTALQFLALGDLPNLTSLPDWLGNLSLLHGLEIYNCPKLTCLPTSIQRLTSLTSLNIYNCSELGKRCKKNTGEDWHKISHIQFIYVSKP 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04800 1089 Gene3D Ribonuclease Inhibitor 667 855 IPR032675 -
Vifa1g04800 1089 Gene3D Ribonuclease Inhibitor 951 1073 IPR032675 -
Vifa1g04800 1089 Gene3D Ribonuclease Inhibitor 856 950 IPR032675 -
Vifa1g04800 1089 Gene3D Ribonuclease Inhibitor 506 660 IPR032675 -
Vifa1g04800 1089 FunFam Probable disease resistance protein At1g61300 146 316 - -
Vifa1g04800 1089 PANTHER DISEASE RESISTANCE PROTEIN RP 40 833 IPR044974 GO:0006952
Vifa1g04800 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 420 IPR027417 -
Vifa1g04800 1089 Gene3D - 5 130 - -
Vifa1g04800 1089 SUPERFAMILY L domain-like 469 908 - -
Vifa1g04800 1089 SUPERFAMILY RNI-like 812 1085 - -
Vifa1g04800 1089 Pfam Rx N-terminal domain 5 91 IPR041118 -
Vifa1g04800 1089 Gene3D - 405 496 IPR036388 -
Vifa1g04800 1089 Coils Coil 31 51 - -
Vifa1g04800 1089 Pfam NB-ARC domain 167 406 IPR002182 GO:0043531
Vifa1g04800 1089 Gene3D - 149 315 IPR027417 -
Vifa1g04800 1089 Gene3D - 322 404 IPR042197 -
Vifa1g04800 1089 FunFam Probable disease resistance protein At1g63360 406 495 - -
Vifa1g04800 1089 CDD RX-CC_like 2 130 IPR038005 -
Vifa1g04800 1089 PRINTS Disease resistance protein signature 189 204 - -
Vifa1g04800 1089 PRINTS Disease resistance protein signature 622 638 - -
Vifa1g04800 1089 PRINTS Disease resistance protein signature 262 276 - -
Vifa1g04800 1089 PRINTS Disease resistance protein signature 358 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04800 Vifa-Chr1 751768730 751771999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04800 186 648 WRKY Transcription Factor Family AT5G45050 22.820 4.44e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04800 - - psat:127123120 1552.73