Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04792 ATGTCGCTCTCCTACTCCAACTTCTTCCTCGAAGACGACCTCCTATGCAGCGAGGAAACCTCCAGCATCTTGTCCGGAGGTTCTCCGGCGGATTGCTTCTCCGATCTCGATTCATTTCTGCCGCCGGAGGAAGAGTTCATCGCCGGGTTAATCGAAGATGAACACAAGTTCGTTCTCGGATTTGACTATTTCTCAAAGTTACAGTCTCGCACGATCGATGCATCAGCCAGAGAAGAATCCGTTGCATGGATCATAAAGGTACATGCTTATTACGGTTTTCAACCGCTCACGGCGTATCTCGCCGTCAACTACATGGATCGGTTCTTGAATTCTCGGCAGTTGCCGCAATCAAATGGGTGGCCACTGCAACTTCTATCAGTTGCTTCGTTGTCTCTAGCGGCCAAGATGGAGGAAACTATAGTCCCTTCTCTATTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTGAACCAAGAACAATTAGAAGAATGGAGCTACTTGTTCTTAGTGTCTTGGATTGGAGGCTAAGATCAGTAACCCCATTTAGCTTTCTCAGTTTCTTTGCATGCAAGTTAGATTCCACTGGAATTTTTACCGGGTTTCTCATTTCACGAGCTACACAAGTTATTTTATCTCATATCCAAGAGGCAAACTTTCTTGCATATTGGCCATCATGCATTGCTGCGGCGGTTATTCTCTATGCAGCTAATGAAATTCCTAATTGGTCTCTAGTTAAGCCAGAGCATGCCGAGACATGGTGCGAGGGATTAAGAAAAGAGAAAATTATAGGGTGCTACAGGTTAATGGAAGAAGTTATGATTGAAAATAACCAAAGGAAAGCCCCTAAAGTATTGCCACAGCTGCGAGTGACAACTCAGCCACTTATGAGGTCAAGTGACTCGTCATCCTCCTCTTCTTCTTCCTCCTCACCATCCTATAATAAAAGAAGGAAATTAAATAACTGTTGGTGGGTAGATGATGACAAAGGAAACTCCCAATGA 1002 0.4441 MSLSYSNFFLEDDLLCSEETSSILSGGSPADCFSDLDSFLPPEEEFIAGLIEDEHKFVLGFDYFSKLQSRTIDASAREESVAWIIKVHAYYGFQPLTAYLAVNYMDRFLNSRQLPQSNGWPLQLLSVASLSLAAKMEETIVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLRSVTPFSFLSFFACKLDSTGIFTGFLISRATQVILSHIQEANFLAYWPSCIAAAVILYAANEIPNWSLVKPEHAETWCEGLRKEKIIGCYRLMEEVMIENNQRKAPKVLPQLRVTTQPLMRSSDSSSSSSSSSSPSYNKRRKLNNCWWVDDDKGNSQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04792 333 MobiDBLite consensus disorder prediction 294 315 - -
Vifa1g04792 333 Gene3D - 50 240 - -
Vifa1g04792 333 CDD CYCLIN_AtCycD-like_rpt2 179 269 - -
Vifa1g04792 333 SMART cyclin_7 82 170 IPR013763 -
Vifa1g04792 333 FunFam D2/4-type cyclin 60 177 - -
Vifa1g04792 333 Pfam Cyclin, N-terminal domain 49 176 IPR006671 -
Vifa1g04792 333 SUPERFAMILY Cyclin-like 35 176 IPR036915 -
Vifa1g04792 333 SMART Cyclin_C_2 179 312 IPR004367 -
Vifa1g04792 333 Gene3D - 60 177 - -
Vifa1g04792 333 PANTHER CYCLINS 50 276 IPR039361 -
Vifa1g04792 333 SUPERFAMILY Cyclin-like 161 280 IPR036915 -
Vifa1g04792 333 Pfam Cyclin, C-terminal domain 179 289 IPR004367 -
Vifa1g04792 333 ProSitePatterns Cyclins signature. 77 108 IPR006671 -
Vifa1g04792 333 CDD CYCLIN_AtCycD-like_rpt1 76 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04792 Vifa-Chr1 749925376 749928706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04792 1 333 Core Cell Cycle Gene Families AT1G70210 57.391 5.30e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04792 K18810 - gmx:100775224 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04792 1 749925376 749928706 Vifa1g04792 1 749925376 749928706 ECH