Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04769 ATGGAGGGTCAATCTTCAAATGAAGGTTCCAGTTCCACCAATGTTTCGCCACACTCTTCTGATTCAACACTTCAGCTCAATATCAAAACTTTAGATTCCCGAATCTACACTTTCCAAGTTCAAAAAAATATGCCTGTTTCCTTGTTCAAACAAAAAATTGCAAATGAAATTGGTGTACCGGTTAATCAACAACGACTCATATTTAGAGGAAAAGTCTTGAAGGATGAACATTCTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAGCCAAATCCGCCGCAGACTTCTGCTACGCCTTCTGTTGAGACAACTACTACAAACAGTAACCGAGGAAACGATGCTGGATCAGGAGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGCGTCGTACTCGGGACTTTTAATGTGGGGGAACAGGTTGAAGGCACTGCTCAAGACCTTACTAGGGTTATTGGGGCAGTTTTGAATTCTATTGCCAATGGGGGACAGGGCCAGAGCACAATTAATGTTCCGAATTCTACACAACATTCTCCGGCTCCACCGGGGAATGAAACTGAAGGAAATCAAAGCCTAGCTGGAAATCAGGCACCGTCTGGACAGACATTTCCTGGTTTGGCATTTCAACCGATGCCTCATGTTGTTCAGATTCCGACCGTCGCAGGAGCAATACCCATTCCTTCTTTCAACACACCAATTCCTGACTCACTGAACACTTTGTCTGAGTTCATAAATCGCATGGAACAGATACTTTCACAAAACGGTTATGGGCCAAATATATCTTCAACTAGCTCTGGAGATCAACGGGTAGAATTGCCTTCCAATACACAAGGGTTGCCAACACTTGAAGCATTGACCGCTGTATTGCATCGCGCAGAACAGTTGCTTAGTGGTCAAGCTGTTTCTGTGCTATATCATATTGCAGGACGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTGTAAGAGGTCAAATACAGTCTGAGTCAGTACAGATAGGAATTGTTATGCAGCATTTGGGTGCACTTCTACTTGAACTAGGCCGAACTATGTTAACACTGCGAATGGGACGATCTTCTGCAGAATCTGTTGTTAATTCTGGACCAGCAGTTTATATTTCTCCATCGGGACCAAATCCTATAATGGCACAGCCATTTCCACTCCAGACAAGCTCCCTGTTTGGCGGTCCACTTTCATCTTCAACTCCTGCAACTTTAGGCACAGTTGGTGTTGGAAGTGCTCCTAGGAACGTGAACATTCACATACATGCTGCCATTGGCTCTAGACCAAATAATGGGGAAGGGACAAGGACTGAACACCGTAGTGAGTCTGGCTCTGGTGATTCAGCGGAAATTCATTCTCGTCTCAGAAACTCTGTTGGTAATTTGCAAGGAGATAACACAGTTCTGTCAGGCCAAACACAATCAACTAACAGGGACGTGTCTTCTGGATCTGAACTAAGACCTGCACATGTAAATGAACAGAGAGATACTACAGTGGAGATGAATGAATGTGGGGCTGCCAGTGCATCTTCAGTTGGTTGCACTTCTGAAAGTGGAGCAGAGAAGCCCCAAACTGAGACAATCAAAACCTGTAGTAATGACGAGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAATCAAGATTTACAAACTTCTTCTAGTGGAGAAACCATGGTAAAATCAGAAAAAGTACAGGATGCTCCATCTGCAAGTGAAAGACGGGATGTAACTGAACCTGCCAAAACTGCTCCTCTTGGATTGGGTATGAGTGGTTTGGAGCGTAAGAGACGGACTAGACTTCAACCTCCTGTTGGTAAAGGTGCCGGTGATGGATCCTCCAGTTCTTCCATCAACCAAAGTCAGGAAACAAGGACAGATAGTCAAAATCTATTGCAAACACCTGCGGGCCAAGGATCAGCTGTTAATTTGATAAATGGGGATAGGCCATCATCTCAGCGACCCATGCCACCCGGTGGTAGTCAGGTTGATGTGGCAGGTTTAATGTCTCAGTTCACACAAAGCCCACAGATGATGAACACAGTCAATCAGATTGCCCAGCAGGTTGACAGTCAGGGTATGGGAAATATGTTATCTGGAATGGGAAGAGGGCAGGGTGGTGGCATCGACTTCTCAAGGATGTTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGAGGGGGAAATCCTCCATCACCATTCTCTGCTGCAGAACCAGAAACCCTTGTTCCCTACAGGAATGAAAATTCTGATAATCAAAACTTACAGCTTGACCTTCAACCAGTGGTAGAGACGATCAATCGTCTGAGTCCACCTGCAGACATCTTCCGTGCTGTAGCTGAAAATGCCGTTCAGCAGTCTGGCAGTGGAAGTGCTTCCAATGACCTTCTGGATGAGTTGTGTTGCAATGAAAGTCTTGCCAGTGAATATTTGGAGATGTTGCGACATGATGTAGGTCAGTTGCTTGAAGGACGTTCCAAGAGTGACAAGTCATAA 2529 0.4504 MEGQSSNEGSSSTNVSPHSSDSTLQLNIKTLDSRIYTFQVQKNMPVSLFKQKIANEIGVPVNQQRLIFRGKVLKDEHSLSEYHVENGHTLHLVERQPNPPQTSATPSVETTTTNSNRGNDAGSGAPRNRVGQISHSVVLGTFNVGEQVEGTAQDLTRVIGAVLNSIANGGQGQSTINVPNSTQHSPAPPGNETEGNQSLAGNQAPSGQTFPGLAFQPMPHVVQIPTVAGAIPIPSFNTPIPDSLNTLSEFINRMEQILSQNGYGPNISSTSSGDQRVELPSNTQGLPTLEALTAVLHRAEQLLSGQAVSVLYHIAGRMEREGTSADLGVRGQIQSESVQIGIVMQHLGALLLELGRTMLTLRMGRSSAESVVNSGPAVYISPSGPNPIMAQPFPLQTSSLFGGPLSSSTPATLGTVGVGSAPRNVNIHIHAAIGSRPNNGEGTRTEHRSESGSGDSAEIHSRLRNSVGNLQGDNTVLSGQTQSTNRDVSSGSELRPAHVNEQRDTTVEMNECGAASASSVGCTSESGAEKPQTETIKTCSNDERDVLVDKFVSSSSNQDLQTSSSGETMVKSEKVQDAPSASERRDVTEPAKTAPLGLGMSGLERKRRTRLQPPVGKGAGDGSSSSSINQSQETRTDSQNLLQTPAGQGSAVNLINGDRPSSQRPMPPGGSQVDVAGLMSQFTQSPQMMNTVNQIAQQVDSQGMGNMLSGMGRGQGGGIDFSRMFQQMMPIVSQALGGGNPPSPFSAAEPETLVPYRNENSDNQNLQLDLQPVVETINRLSPPADIFRAVAENAVQQSGSGSASNDLLDELCCNESLASEYLEMLRHDVGQLLEGRSKSDKS 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04769 842 MobiDBLite consensus disorder prediction 93 129 - -
Vifa1g04769 842 MobiDBLite consensus disorder prediction 169 214 - -
Vifa1g04769 842 MobiDBLite consensus disorder prediction 458 491 - -
Vifa1g04769 842 SMART ubq_7 24 95 IPR000626 GO:0005515
Vifa1g04769 842 MobiDBLite consensus disorder prediction 169 210 - -
Vifa1g04769 842 Gene3D - 12 108 - -
Vifa1g04769 842 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 841 - -
Vifa1g04769 842 PRINTS Ubiquitin signature 34 54 IPR019956 -
Vifa1g04769 842 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vifa1g04769 842 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vifa1g04769 842 MobiDBLite consensus disorder prediction 95 122 - -
Vifa1g04769 842 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g04769 842 MobiDBLite consensus disorder prediction 441 457 - -
Vifa1g04769 842 MobiDBLite consensus disorder prediction 551 674 - -
Vifa1g04769 842 CDD Ubl_ubiquitin_like 26 93 - -
Vifa1g04769 842 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vifa1g04769 842 MobiDBLite consensus disorder prediction 619 668 - -
Vifa1g04769 842 SUPERFAMILY Ubiquitin-like 10 100 IPR029071 -
Vifa1g04769 842 MobiDBLite consensus disorder prediction 432 506 - -
Vifa1g04769 842 MobiDBLite consensus disorder prediction 551 571 - -
Vifa1g04769 842 FunFam Large proline-rich protein BAG6 16 109 - -
Vifa1g04769 842 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04769 Vifa-Chr1 744795569 744805006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04769 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 9.86e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04769 - - gmx:100783611 1112.83