Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04768 ATGGAGGGTCAATCTTCAAATGAAGGTTCCAGTTCCACCAATGTTTCGCCACACTCTTCTGATTCAACACTTCAGCTCAATATCAAAACTTTAGATTCCCGAATCTACACTTTCCAAGTTCAAAAAAATATGCCTGTTTCCTTGTTCAAACAAAAAATTGCAAATGAAATTGGTGTACCGGTTAATCAACAACGACTCATATTTAGAGGAAAAGTCTTGAAGGATGAACATTCTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAGCCAAATCCGCCGCAGACTTCTGCTACGCCTTCTGTTGAGACAACTACTACAAACAGTAACCGAGGAAACGATGCTGGATCAGGAGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGCGTCGTACTCGGGACTTTTAATGTGGGGGAACAGGTTGAAGGCACTGCTCAAGACCTTACTAGGGTTATTGGGGCAGTTTTGAATTCTATTGCCAATGGGGGACAGGGCCAGAGCACAATTAATGTTCCGAATTCTACACAACATTCTCCGGCTCCACCGGGGAATGAAACTGAAGGAAATCAAAGCCTAGCTGGAAATCAGGCACCGTCTGGACAGACATTTCCTGGTTTGGCATTTCAACCGATGCCTCATGTTGTTCAGATTCCGACCGTCGCAGGAGCAATACCCATTCCTTCTTTCAACACACCAATTCCTGACTCACTGAACACTTTGTCTGAGTTCATAAATCGCATGGAACAGATACTTTCACAAAACGGTTATGGGCCAAATATATCTTCAACTAGCTCTGGAGATCAACGGGTAGAATTGCCTTCCAATACACAAGGGTTGCCAACACTTGAAGCATTGACCGCTGTATTGCATCGCGCAGAACAGTTGCTTAGTGGTCAAGCTGTTTCTGTGCTATATCATATTGCAGGACGCATGGAGCGAGAGGGAACTTCTGCTGATCTAGGTGTAAGAGGTCAAATACAGTCTGAGTCAGTACAGATAGGAATTGTTATGCAGCATTTGGGTGCACTTCTACTTGAACTAGGCCGAACTATGTTAACACTGCGAATGGGACGATCTTCTGCAGAATCTGTTGTTAATTCTGGACCAGCAGTTTATATTTCTCCATCGGGACCAAATCCTATAATGGCACAGCCATTTCCACTCCAGACAAGCTCCCTGTTTGGCGGTCCACTTTCATCTTCAACTCCTGCAACTTTAGGCACAGTTGGTGTTGGAAGTGCTCCTAGGAACGTGAACATTCACATACATGCTGGTGCCTCTCTTGCACCAATTGTTTCAGCCATTGGCTCTAGACCAAATAATGGGGAAGGGACAAGGACTGAACACCGTAGTGAGTCTGGCTCTGGTGATTCAGCGGAAATTCATTCTCGTCTCAGAAACTCTGTTGGTAATTTGCAAGGAGATAACACAGTTCTGTCAGGTGGCCAAACACAATCAACTAACAGGGACGTGTCTTCTGGATCTGAACTAAGACCTGCACATGTAAATGAACAGAGAGATACTACAGTGGAGATGAATGAATGTGGGGCTGCCAGTGCATCTTCAGTTGGTTGCACTTCTGAAAGTGGAGCAGAGAAGCCCCAAACTGAGACAATCAAAACCTGTAGTAATGACGAGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAATCAAGATTTACAAACTTCTTCTAGTGGAGAAACCATGGTAAAATCAGAAAAAGTACAGGATGCTCCATCTGCAAGTGAAAGACGGGATGTAACTGAACCTGCCAAAACTGCTCCTCTTGGATTGGGTATGAGTGGTTTGGAGCGTAAGAGACGGACTAGACTTCAACCTCCTGTTGGTAAAGGTGCCGGTGATGGATCCTCCAGTTCTTCCATCAACCAAAGTCAGGAAACAAGGACAGATAGTCAAAATCTATTGCAAACACCTGCGGGCCAAGGATCAGCTGTTAATTTGATAAATGGGGATAGGCCATCATCTCAGCGACCCATGCCACCCGGTGGTAGTCAGGTTGATGTGGCAGGTTTAATGTCTCAGTTCACACAAAGCCCACAGATGATGAACACAGTCAATCAGATTGCCCAGCAGGTTGACAGTCAGGGTATGGGAAATATGTTATCTGGAATGGGAAGAGGGCAGGGTGGTGGCATCGACTTCTCAAGGATGTTTCAACAGATGATGCCCATTGTATCACAAGCCCTTGGAGGGGGAAATCCTCCATCACCATTCTCTGCTGCAGAACCAGAAACCCTTGTTCCCTACAGGAATGAAAATTCTGATAATCAAAACTTACAGCTTGACCTTCAACCAGTGGTAGAGACGATCAATCGTCTGAGTCCACCTGCAGACATCTTCCGTGCTGTAGCTGAAAATGCCGTTCAGCAGTCTGGCAGTGGAAGTGCTTCCAATGACCTTCTGGATGAGTTGTGTTGCAATGAAAGTCTTGCCAGTGAATATTTGGAGATGTTGCGACATGATGTAGGTCAGTTGCTTGAAGGACGTTCCAAGAGTGACAAGTCATAA 2559 0.451 MEGQSSNEGSSSTNVSPHSSDSTLQLNIKTLDSRIYTFQVQKNMPVSLFKQKIANEIGVPVNQQRLIFRGKVLKDEHSLSEYHVENGHTLHLVERQPNPPQTSATPSVETTTTNSNRGNDAGSGAPRNRVGQISHSVVLGTFNVGEQVEGTAQDLTRVIGAVLNSIANGGQGQSTINVPNSTQHSPAPPGNETEGNQSLAGNQAPSGQTFPGLAFQPMPHVVQIPTVAGAIPIPSFNTPIPDSLNTLSEFINRMEQILSQNGYGPNISSTSSGDQRVELPSNTQGLPTLEALTAVLHRAEQLLSGQAVSVLYHIAGRMEREGTSADLGVRGQIQSESVQIGIVMQHLGALLLELGRTMLTLRMGRSSAESVVNSGPAVYISPSGPNPIMAQPFPLQTSSLFGGPLSSSTPATLGTVGVGSAPRNVNIHIHAGASLAPIVSAIGSRPNNGEGTRTEHRSESGSGDSAEIHSRLRNSVGNLQGDNTVLSGGQTQSTNRDVSSGSELRPAHVNEQRDTTVEMNECGAASASSVGCTSESGAEKPQTETIKTCSNDERDVLVDKFVSSSSNQDLQTSSSGETMVKSEKVQDAPSASERRDVTEPAKTAPLGLGMSGLERKRRTRLQPPVGKGAGDGSSSSSINQSQETRTDSQNLLQTPAGQGSAVNLINGDRPSSQRPMPPGGSQVDVAGLMSQFTQSPQMMNTVNQIAQQVDSQGMGNMLSGMGRGQGGGIDFSRMFQQMMPIVSQALGGGNPPSPFSAAEPETLVPYRNENSDNQNLQLDLQPVVETINRLSPPADIFRAVAENAVQQSGSGSASNDLLDELCCNESLASEYLEMLRHDVGQLLEGRSKSDKS 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04768 852 MobiDBLite consensus disorder prediction 561 684 - -
Vifa1g04768 852 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 851 - -
Vifa1g04768 852 MobiDBLite consensus disorder prediction 629 678 - -
Vifa1g04768 852 MobiDBLite consensus disorder prediction 93 129 - -
Vifa1g04768 852 MobiDBLite consensus disorder prediction 169 214 - -
Vifa1g04768 852 SMART ubq_7 24 95 IPR000626 GO:0005515
Vifa1g04768 852 MobiDBLite consensus disorder prediction 561 581 - -
Vifa1g04768 852 MobiDBLite consensus disorder prediction 169 210 - -
Vifa1g04768 852 FunFam Large proline-rich protein BAG6 16 109 - -
Vifa1g04768 852 Gene3D - 12 108 - -
Vifa1g04768 852 MobiDBLite consensus disorder prediction 442 516 - -
Vifa1g04768 852 MobiDBLite consensus disorder prediction 95 122 - -
Vifa1g04768 852 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g04768 852 CDD Ubl_ubiquitin_like 26 93 - -
Vifa1g04768 852 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Vifa1g04768 852 SUPERFAMILY Ubiquitin-like 10 100 IPR029071 -
Vifa1g04768 852 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Vifa1g04768 852 MobiDBLite consensus disorder prediction 450 466 - -
Vifa1g04768 852 MobiDBLite consensus disorder prediction 467 501 - -
Vifa1g04768 852 PRINTS Ubiquitin signature 76 97 IPR019956 -
Vifa1g04768 852 PRINTS Ubiquitin signature 55 75 IPR019956 -
Vifa1g04768 852 PRINTS Ubiquitin signature 34 54 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04768 Vifa-Chr1 744795569 744805006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04768 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 8.56e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04768 - - mtr:25482215 1142.49