Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04732 ATGCTAGGGGACTCAGCAGTGTTAGGAACAGGAGGTGGAGGAGGAAGTTCGGGAGATGCAGCAGGAGCATCAGCATCAGCATCAGCCGGAGCTTATCATGACGGCGGCGACACGGTGGCTGGTGGCGGTGGATCAATTTCAGGAGATGATGAAAGAGGAGGTGGTAGTAGAAATGAAGAGGGTGGTGATAGAAATTTTGGTGGTAATAGATGGCCAAGACAAGAAACTATTGCTCTGTTGAAGATAAGGTCCGAAATGGATGTCACTTTTAGAGATGCAAGTGTTAAAGGTCCCTTATGGGATGAAGTTTCAAGGAAAATGGCAGATCTTGGGTATCACAGAAACTCCAAAAAATGCAAAGAAAAATTTGAGAATGTTTACAAATATCACAAGAGAACCAAAGAAGGAAGAGGTGGAAAATCAGAAGGTAAAACTTATAGATTTTTTGATCAGTTACAAGCCCTTGAAAATAACCCTTCAATTCAATCACCAAGACCACAAACACAGTTGAATATTTCAACATTACCTCCAACTCCAACAACAACACCTTCATCATCATTACCAATTTCAACTACATCAACTACACCTACAACCACAAATCCATTGCTATTGCCACCCTCATTGTTAAACTCTACATCTTCTATTACTATTCACACCCCTTCTATCACCACCGCCGCGGCCATCACTGTTCCATTGACAACCACAATTACACCACCAATTCCAATGTCTTTACCTCAAGTTCAAAACATTGTCTCACAATCCAACCCTACATATTTTCCACCAATACCATCCACAACAACAGCGATAAACACACCAAATACTAATAACCCACATCCTCAAATTACTATTACACCCCCACCATCTTCATTTCAGAACATTTCAACTGATTTCTTCTCGAATTCGAGTTCATCTTCAACTTCTTCGGAGGAAACAACGACGATGGAAGGCGGAGGAAACCGGAGGAAACGGAAGAGGAAATGGAAGGATTTTTTTGAGAGACTGATGAAGGAAGTTGTTGAGAAACAAGAGGAGCTGCATAAGAGATTCTTGGAAGCTATTGAGAAAAGAGAATTAGAGAGAGGTGCTAGAGAAGAAGCTTGGAGGTTGCAAGAGATGCAAAGGATTAATAGAGAAAGGGAAATTCTTGCTCAAGAGAGATCTATTGCTGCCGCTAAAGATGCTGCTGTTATGGCTTTTTTACAAAAGATTGCTGATCAACAACAAGAACAACAACAAAATACTGTTACTCCTGTTGCATTGAACACCAACATTGTTCCTCCACAACAACAAGCACCACAAGAACCGATACAGACACAAACACAAACACCTGCACCTGCACCAGCACCAGCGCCGATGCCAACACCAATGCAGACACCAACGCCAGCACCAGCACCAGCACCGGCGCCAACACCAATGCAGACACCAACACCAATGCCATTGCCGATACCAATACAACCACATCAACAAGTTCAAACTCCAACTTCAGTAGTGCAAGTGCAACAAACAACACCAGTTATTTCACAGGCTTTACCGTTGGCGCAACAACAGGTTCAGGTTCAAGTTCAGCAGCAAGCGACAAATATGGACATTGTGAAAAGAGACAACAATGGTGAGAGTTCGATGCAAGCAAGCTCATCAAGGTGGCCGAAGACCGAGGTTGAAGCATTGATAAGGCTGAGAACAACTCTTGATATAAAGTATCAAGAAAATGGACCTAAGGGGCCATTATGGGAGGAGATATCAGGGCTAATGAAGAACCTCGGGTACAATAGGAATGCAAAGAGGTGCAAAGAGAAATGGGAGAATATCAACAAATACTTCAAGAAAGTGAAGGAAAGCAACAAGAAAAGGCCGGAAGATTCGAAGACATGTCCATATTTTCACCAACTCGATGCTCTATATCGGGAGAAGAACAAGGGCGAGGGGACCAGCGCATCAAGGCCCGAGGGAACAATGATGGCGCCATTGATGGTGCGGCCAGAGCAGCAATGGCCTCCACAGCCACAGCCACAGCCACAACCGCCACCAACAACTAGGGCGGATGTGACCATGCAGGATGCTGAGAATGACCGGCCACACCGTGATGATGAAGAGTATTATGACGATGATGACGGTGATGAAGAAGACGAAGACGAAGGAAGTGACAACTATGAAGTGGTTGCAAACAAACCACCACCACCTCAATAA 2187 0.4422 MLGDSAVLGTGGGGGSSGDAAGASASASAGAYHDGGDTVAGGGGSISGDDERGGGSRNEEGGDRNFGGNRWPRQETIALLKIRSEMDVTFRDASVKGPLWDEVSRKMADLGYHRNSKKCKEKFENVYKYHKRTKEGRGGKSEGKTYRFFDQLQALENNPSIQSPRPQTQLNISTLPPTPTTTPSSSLPISTTSTTPTTTNPLLLPPSLLNSTSSITIHTPSITTAAAITVPLTTTITPPIPMSLPQVQNIVSQSNPTYFPPIPSTTTAINTPNTNNPHPQITITPPPSSFQNISTDFFSNSSSSSTSSEETTTMEGGGNRRKRKRKWKDFFERLMKEVVEKQEELHKRFLEAIEKRELERGAREEAWRLQEMQRINREREILAQERSIAAAKDAAVMAFLQKIADQQQEQQQNTVTPVALNTNIVPPQQQAPQEPIQTQTQTPAPAPAPAPMPTPMQTPTPAPAPAPAPTPMQTPTPMPLPIPIQPHQQVQTPTSVVQVQQTTPVISQALPLAQQQVQVQVQQQATNMDIVKRDNNGESSMQASSSRWPKTEVEALIRLRTTLDIKYQENGPKGPLWEEISGLMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKGEGTSASRPEGTMMAPLMVRPEQQWPPQPQPQPQPPPTTRADVTMQDAENDRPHRDDEEYYDDDDGDEEDEDEGSDNYEVVANKPPPPQ 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04732 728 MobiDBLite consensus disorder prediction 429 476 - -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 660 728 - -
Vifa1g04732 728 CDD GT1 546 611 - -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 297 324 - -
Vifa1g04732 728 ProSiteProfiles Myb-like domain profile. 540 604 IPR001005 -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 297 314 - -
Vifa1g04732 728 PANTHER FI21293P1 44 681 - -
Vifa1g04732 728 CDD GT1 69 134 - -
Vifa1g04732 728 Pfam Myb/SANT-like DNA-binding domain 546 633 IPR044822 -
Vifa1g04732 728 Pfam Myb/SANT-like DNA-binding domain 69 155 IPR044822 -
Vifa1g04732 728 ProSiteProfiles Myb-like domain profile. 63 127 IPR001005 -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 442 476 - -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 1 70 - -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 158 205 - -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 699 715 - -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 661 677 - -
Vifa1g04732 728 FunFam Trihelix transcription factor GT-2 71 132 - -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 684 698 - -
Vifa1g04732 728 SMART sant 67 129 IPR001005 -
Vifa1g04732 728 SMART sant 544 606 IPR001005 -
Vifa1g04732 728 MobiDBLite consensus disorder prediction 52 66 - -
Vifa1g04732 728 FunFam Trihelix transcription factor GT-2 548 609 - -
Vifa1g04732 728 Gene3D - 71 132 - -
Vifa1g04732 728 Gene3D - 548 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04732 Vifa-Chr1 740508531 740511636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04732 58 664 Trihelix Transcription Factor Family AT1G76880 43.471 6.00e-122 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa1g04732 Myb_DNA-bind_4 8.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04732 - - psat:127127275 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04732 1 740508531 740511636 Vifa3g02792 3 777851040 777853402 PCT