Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04730 ATGGTGGTTTCTTACAAAGAATGTCTCAAAAACCATGATGCGTCTCTAGGTGGACATGCACTTGATGGCTGTGGAGAATTCATGCCTTCATCAACCGTTAATCCAAATGACCCTGATCCCTCAAATGTGCTGCTTGTGCCTGTCACCGGAACTTCCGCCGCCGTGAACCACAAGAACAACACATCATCACCACCATCCTTTGTCCAGGGCCTCACTTCCAAAACCTTCAAACACTTTCCTGTCAATTCCGATGAATCTGAATTCGAGGCTTCTGATGTGCCTACTTCGGCCTCTAATGTTCGAAAGGATCTCAACGAATTTCAGGAGAAGCATGCCAATCTTGTTTTAACTACTGTTAAGGAAATTTCAAGGTTGAGATACGAACTATGCCCACGTGCTATGAAGGAAAGACACTTTTGGAGGATATATTTCACACTTGTCAACACTCATGTGGCTCCTTATGAGAAGCAATATATGGAAGCGCTGAGAGAAGCAGCAAAGCGGAGTGAAGATCCTATGGTAGAGCAAACTGATGTTGGTGAAGGAAGTGGAAAGGCCGAAGTAACAGGGAAGCTTCTAAAGAGTAAATCCTCTAATGCATCCTCTTATGATTAG 615 0.4423 MVVSYKECLKNHDASLGGHALDGCGEFMPSSTVNPNDPDPSNVLLVPVTGTSAAVNHKNNTSSPPSFVQGLTSKTFKHFPVNSDESEFEASDVPTSASNVRKDLNEFQEKHANLVLTTVKEISRLRYELCPRAMKERHFWRIYFTLVNTHVAPYEKQYMEALREAAKRSEDPMVEQTDVGEGSGKAEVTGKLLKSKSSNASSYD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04730 204 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 59 IPR006456 -
Vifa1g04730 204 ProSiteProfiles BSD domain profile. 106 151 IPR005607 -
Vifa1g04730 204 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 39 IPR006456 -
Vifa1g04730 204 PANTHER BSD DOMAIN-CONTAINING PROTEIN 67 181 - -
Vifa1g04730 204 Pfam ZF-HD protein dimerisation region 3 32 IPR006456 -
Vifa1g04730 204 SMART wurzfinal6 99 151 IPR005607 -
Vifa1g04730 204 Gene3D BSD domain 72 161 IPR035925 -
Vifa1g04730 204 MobiDBLite consensus disorder prediction 166 204 - -
Vifa1g04730 204 Pfam BSD domain 104 151 IPR005607 -
Vifa1g04730 204 SUPERFAMILY BSD domain-like 71 156 IPR035925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04730 Vifa-Chr1 740259573 740260273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04730 67 166 EF-hand Containing Proteins AT1G69030 72.000 9.97e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa1g04730 BSD 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04730 - - ccaj:109798080 189.504