Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04726 ATGATTTCCAGAAACACAATTAAACCCATATCGCTGTTCATCTTCTTCTCCATTCGTCTCCTCCCAAACTCCCCCTGTCTCACTCCATTACTCCCTTTGTTCCGTCATCTCTCTGATATAACTCCCTCCGGTAGTCATTCCAAATCTCCTAAAGTGGTTATAGCTGGTTTGGAACGACGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTTTTTGAGTTTGATGAAAAAAGAAGAAGATGTAGACGACGTCTTTCACATCATAATGCAAAGCAGCGTAAACCTCGTCCTTCTGATGTTGTCCAATCAAGCCAATCAGCTTTGTCTTCTTCGCGATGTGGTGTAGAAGATTTCATTACCTTTTCTGATACAAATGCAACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCAATCAGTGGGATTCGTATGCGACTGAATCTATTTCTCTAGAACATTCTAATCGCACAAGCAGTTGTGGTCAAGCCATAACACATGCAATGAGTCAGGGCACAGCGCTTGCTTCATCAGAATATATTAGTGAGCATGATCAACATGTCAATTCCAGCATGTGGATATCAAACTCAAACTGTGAAGAAAGCAATCACTTTCAAGAATTTCAACTGTTGAGAGAACCTTATGAATCTGGTTTTCACCAGTTGGACTAA 672 0.4122 MISRNTIKPISLFIFFSIRLLPNSPCLTPLLPLFRHLSDITPSGSHSKSPKVVIAGLERRFCQQCSRFHALFEFDEKRRRCRRRLSHHNAKQRKPRPSDVVQSSQSALSSSRCGVEDFITFSDTNATQDFTCALSLLSTNQWDSYATESISLEHSNRTSSCGQAITHAMSQGTALASSEYISEHDQHVNSSMWISNSNCEESNHFQEFQLLREPYESGFHQLD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04726 223 SUPERFAMILY SBT domain 45 99 IPR036893 GO:0003677|GO:0005634
Vifa1g04726 223 MobiDBLite consensus disorder prediction 85 105 - -
Vifa1g04726 223 Gene3D - 43 82 IPR036893 GO:0003677|GO:0005634
Vifa1g04726 223 ProSiteProfiles Zinc finger SBP-type profile. 18 95 IPR004333 GO:0003677
Vifa1g04726 223 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 174 IPR044817 GO:0003677
Vifa1g04726 223 Pfam SBP domain 45 94 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04726 Vifa-Chr1 739707649 739711259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04726 45 96 SBP-box Gene Family AT1G27370 76.923 1.36e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa1g04726 SBP 5.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04726 - - mtr:25501754 197.208