Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04718 ATGGAACTCAACTTTTCTCTAAATATGTTTTCTACTCAAGATCAAACCGTTACAACTCCACCCGATGATTTTTCAAGTGGTGATTTTTACATTCATTTTCATTTGATCAATGTAAATTTTCCCTCTCAAACTAATGTTACAAATTCAATCGATGACTTTACAACCACCATTATTAATCAGAATTTTTGGATTTCTAGTAACAACTTATGTAGTTGTAATGACACAACAGTCTTGGACGAAGATAACAATATCTCTTTATATGATTCTTTTTCCACTCTGCCTATTCCACATTCTATATTAAGAACAATTCTTCCTGCCATTGGAGCTGCTGCTAGGCAAATGCGCGCAGAAAACAATGAAGGTCGCGATGTATTAGAGATGCATGTGACACTTTGTTTGACCACACAACCTATTCAAATGGATATGGTTCAAGAATCTCATCCACATGTGTGTGCAGCATCTCAACTCATTGTGGATCGATTAGAGAAAGTTACAATGCATCACACTTCAGATTATTCTACAAAACAATGTTCAATTTGTTTGGAAGAGCTCTCAAATGAATTTAAATCAGAACTTATTAAGACAAAGTGCTTTCATATCTTTCATAAAGATTGCATTTTTCAATGGTTCAAGAAATGCACTATTCGTCAATTGGCTTATTCATGTCCATTATGTCGTTGTAATTGTGAAATCATTTGA 699 0.3376 MELNFSLNMFSTQDQTVTTPPDDFSSGDFYIHFHLINVNFPSQTNVTNSIDDFTTTIINQNFWISSNNLCSCNDTTVLDEDNNISLYDSFSTLPIPHSILRTILPAIGAAARQMRAENNEGRDVLEMHVTLCLTTQPIQMDMVQESHPHVCAASQLIVDRLEKVTMHHTSDYSTKQCSICLEELSNEFKSELIKTKCFHIFHKDCIFQWFKKCTIRQLAYSCPLCRCNCEII 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04718 232 SMART ring_2 177 225 IPR001841 -
Vifa1g04718 232 Pfam Ring finger domain 176 226 IPR001841 -
Vifa1g04718 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 230 IPR013083 -
Vifa1g04718 232 SUPERFAMILY RING/U-box 157 230 - -
Vifa1g04718 232 ProSiteProfiles Zinc finger RING-type profile. 177 226 IPR001841 -
Vifa1g04718 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04718 Vifa-Chr1 737176092 737176790 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04718 169 226 C3H Transcription Factor Family AT1G57730 36.207 2.51e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04718 - - psat:127099352 339.347