Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04716 ATGGAACTCAACTTTTCTCTAAATATGTTTTCTACTCAAGATCAAACCATTACAACTCCACCCGATGATTTTTCAAGTGGCGATTTTTACATTCATTTTCATTTGATCAATGTAAATTTGCCCTCTCAAACTAATGTTACAAATTCAATCGATGACTTTACAACCACCATTATTAATCAGAATTTTTGGATTTCTAGTAACAACTTATGTAGTTGTAATGACACAACAGTCTTGGACGAAGATAACAATATCTCTTTATATGATTCTTTTTCCACTCTGCCTATTCCACATTCTATATTAAGAACAATTCTTCCTGCCATTGGAGCTGGTGCTAGGCAAATGCGTGCAGAAAACAATGAAGGTCGCGATGTATTAGAGATGCATGTGACGCTTTGTTTGACCACACAACCTATGGTTCAAGAATCTCATCCACATGTGTGTGCAGCATCTCAACTCATTGTGGATCGATTAGAGAAAGTTACAATGCATCACACTTCAGATTATTCCACAAAACAATGTTCAATTTGTTTGGAAGAGCTCTCAAATGAATTTAAATCAGAACTTATTAAGACAAAGTGCTTTCATATCTTTCATAAAGATTGCATTTTTCAATGGTTCAAGAAATGCACTATTCGTCAATTGGCTTATTCGTGTCCATTATGTCGTTGTAATTGTGAAATCATTTGA 687 0.3435 MELNFSLNMFSTQDQTITTPPDDFSSGDFYIHFHLINVNLPSQTNVTNSIDDFTTTIINQNFWISSNNLCSCNDTTVLDEDNNISLYDSFSTLPIPHSILRTILPAIGAGARQMRAENNEGRDVLEMHVTLCLTTQPMVQESHPHVCAASQLIVDRLEKVTMHHTSDYSTKQCSICLEELSNEFKSELIKTKCFHIFHKDCIFQWFKKCTIRQLAYSCPLCRCNCEII 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04716 228 Pfam Ring finger domain 172 222 IPR001841 -
Vifa1g04716 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 223 - -
Vifa1g04716 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 226 IPR013083 -
Vifa1g04716 228 SUPERFAMILY RING/U-box 153 226 - -
Vifa1g04716 228 ProSiteProfiles Zinc finger RING-type profile. 173 222 IPR001841 -
Vifa1g04716 228 SMART ring_2 173 221 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04716 Vifa-Chr1 737129601 737130287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04716 165 222 C3H Transcription Factor Family AT1G57730 36.207 2.90e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04716 - - psat:127099352 329.331