Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04714 ATGACCTTGTACATTACATTGTTTGTAGCCATCCTCTTCATCGTGCTCTACAATATATGGAGAGCCAAAAAAAATGTGCCTCCAAATTGGCCAATAATTGGCATGTTACCATCAGTTTTTCATAACAAATCCAATATTCATGATTTTGTAACCTCGGGAATGAAATATTATGGAGGTACTTTGCGTTTCAAAGGTCCTTGGTTCACAAACATTGCCAACTTTATCCTCACCAGTGATCCCGTGAACGTGCACCACATCACTAGCAAGAATTTCAGTAACTATGGAAAAGGATCTGATTTTCATGAGATTTTTGAAACCCTTGGTGTTAGTATTATAAACTTGGATGGCAATGCATGGAAACAAGAGAGGGCACTACTTCATTCATTCCTCAGAAGCAAAAGTTTTGAGACATCCCTTCAACAAAACATTCACAAGAAGCTAGAGAATTGCCTTTTACCATTTCTTGATCACCATGCATCAAAAGGTGCACAGGTACTTGATTTACAAAACATTCTTGAGAGGTTCACTTTTGATGTTACTTGTACTTTTTTATTTGGATTTGATCCTAATTGCCTTCCTCACAAGTTCAATGATGAGTTGTTAGACACTTCTTTTGTAAAAGCTATTTATATGCTTGAGGATATGGTGTTATCAAGACACTATATTCCAAAATGCTTTTGGAAGCTACAAAAATGGCTACAAATTGGCCAAGAGAAGAAGCACAAAGCAGCTCAAGAAATTCTTCACCAATTCTTGTCCAAATGTATAGCTTTTTCCAAAGGCGTTGATGAAAGTCATTTTTGCTTGCTAAAGGAACTAATGAAAGAAAAAAAGGCTGACAATGAGAAGTATATTAGAGACACTGCAGTGAGTCTCTTAGGTGCAGGAAATGGAACAATAAGTTCAGGTCTAAGTTGGTTCTTTTGGCTTGTTTCAACTAATCCTATTGTTGAAACAAAAATCATTCAAGAAATCAAAGATTATTGTCATGCAAATGATGATAATTTAATGACTAGTTTAAGTGTGGAAAAGCTTAATAAGCTAGTTTATCTTCATGGCGCTATTTGTGAAGCTTTGAGGCTTTATCCACCTATACCATTTGAACACAAATGTGCTATAAAATCTGATATTTTACCTAGTGGAGATTATGTTAGTCCAAATACAAAGTTAATATATTCTTTGTATGCGATGGGAAGGATGGAGAAAATATGGGGAAATGATTGCTTGGAGTTCAAGCCAGAGAGGTGGATATCGAGTAGAGGAGGTATTGCTTATGTACCATCTTACAAGTTTATAGTGTTTAATGCAGGTCCAAGAAGTTGTTTGGGAAAAAGTATTACCTTTGTTCAAATGAAAATGGTTGCAGCTGCTTTGTTATGGAAGTTTCATATAGAGACTGTTGAAGGTCACACTATTGCTCCTAGGGTTTCTATGATTCTACGTATGGAATATGGACTTAAGGTCAAAGTTAGTAAGAGATGCATTTGA 1488 0.3575 MTLYITLFVAILFIVLYNIWRAKKNVPPNWPIIGMLPSVFHNKSNIHDFVTSGMKYYGGTLRFKGPWFTNIANFILTSDPVNVHHITSKNFSNYGKGSDFHEIFETLGVSIINLDGNAWKQERALLHSFLRSKSFETSLQQNIHKKLENCLLPFLDHHASKGAQVLDLQNILERFTFDVTCTFLFGFDPNCLPHKFNDELLDTSFVKAIYMLEDMVLSRHYIPKCFWKLQKWLQIGQEKKHKAAQEILHQFLSKCIAFSKGVDESHFCLLKELMKEKKADNEKYIRDTAVSLLGAGNGTISSGLSWFFWLVSTNPIVETKIIQEIKDYCHANDDNLMTSLSVEKLNKLVYLHGAICEALRLYPPIPFEHKCAIKSDILPSGDYVSPNTKLIYSLYAMGRMEKIWGNDCLEFKPERWISSRGGIAYVPSYKFIVFNAGPRSCLGKSITFVQMKMVAAALLWKFHIETVEGHTIAPRVSMILRMEYGLKVKVSKRCI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04714 495 CDD CYP86A 63 486 - -
Vifa1g04714 495 Pfam Cytochrome P450 27 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PRINTS E-class P450 group I signature 304 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PRINTS E-class P450 group I signature 284 301 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PRINTS P450 superfamily signature 295 312 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 PANTHER CYTOCHROME P450 17 487 - -
Vifa1g04714 495 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Vifa1g04714 495 SUPERFAMILY Cytochrome P450 27 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04714 495 Gene3D Cytochrome P450 23 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04714 Vifa-Chr1 736163182 736164669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04714 29 493 Cytochrome P450 AT2G23180 42.769 6.14e-138 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04714 - - cam:101494575 639.032